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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS04065 and DDA3937_RS04070 are separated by 300 nucleotides
DDA3937_RS04070 and DDA3937_RS21910 are separated by 92 nucleotides
DDA3937_RS21910 and DDA3937_RS04080 are separated by 102 nucleotides
DDA3937_RS04080 and DDA3937_RS23025 are separated by 51 nucleotides
DDA3937_RS04065: DDA3937_RS04065 - H-NS histone family protein, at 904,677 to 905,078
_RS04065
DDA3937_RS04070: DDA3937_RS04070 - helix-turn-helix transcriptional regulator, at 905,379 to 905,597
_RS04070
DDA3937_RS21910: DDA3937_RS21910 - helix-turn-helix transcriptional regulator, at 905,690 to 905,920
_RS21910
DDA3937_RS04080: DDA3937_RS04080 - helix-turn-helix domain-containing protein, at 906,023 to 906,268
_RS04080
DDA3937_RS23025: DDA3937_RS23025 - IS1 family transposase, at 906,320 to 906,547
_RS23025
Group
Condition
DDA3937
_RS04065
DDA3937
_RS04070
DDA3937
_RS21910
DDA3937
_RS04080
DDA3937
_RS23025
control
PDB
N.D.
-1.7
+0.6
-0.1
-0.3
plant
Atlantic
N.D.
-1.1
-0.3
+0.1
-0.1
plant
Stem-Atlantic
N.D.
+0.3
+0.0
-1.0
-0.5
stress
7.5mM_PTB
N.D.
-0.8
-0.2
+0.2
-0.3
control
PDB
N.D.
-0.4
-0.0
-0.7
+0.4
control
PDB
N.D.
+0.8
+0.3
-1.1
-0.7
control
PDB
N.D.
+0.4
+0.4
-0.7
-0.5
control
PDB
N.D.
+0.7
-0.3
-0.3
-0.5
carbon source
M9+polygalacturonate
N.D.
+0.9
-0.5
-0.1
-0.2
carbon source
M9+glycerol
N.D.
+0.5
+0.4
-0.4
-0.3
carbon source
M9+starch
N.D.
+0.8
-0.1
-0.2
-0.3
carbon source
M9+glucose+arginine
N.D.
+0.9
-0.2
-0.4
-0.0
plant
Stem-Norland
N.D.
+0.6
-0.5
-0.1
+0.3
plant
Stem-Atlantic
N.D.
-1.4
+0.6
+0.5
+0.7
carbon source
M9+starch
N.D.
+0.8
-0.3
+0.2
-0.4
carbon source
M9+polygalacturonate
N.D.
+1.0
-0.3
-0.1
-0.2
carbon source
M9+sucrose
N.D.
+1.0
+0.0
-0.4
-0.0
plant
Norland
N.D.
+0.8
-0.5
+0.7
-0.1
carbon source
M9+glucose+arginine
N.D.
+1.3
-0.1
-0.2
-0.0
plant
Stem-Norland
N.D.
+0.6
+0.4
-0.2
+0.3
plant
Stem-Norland
N.D.
+0.8
+0.4
+0.2
-0.0
plant
Stem-Atlantic
N.D.
+1.1
-0.4
+0.4
+0.3
plant
Stem-Norland
N.D.
+0.8
+0.3
-0.1
+0.4
plant
Norland
N.D.
+1.0
+0.4
-0.1
+0.2
carbon source
M9+glycerol
N.D.
+1.8
-0.5
+0.2
+0.2
plant
Upstate
N.D.
+0.8
+0.2
+0.5
+0.2
plant
Stem-Atlantic
N.D.
+1.6
+0.4
-0.3
-0.0
plant
Atlantic
N.D.
+4.7
+0.0
+0.0
+0.4
plant
Atlantic
N.D.
+5.5
-0.2
+0.5
+0.1
plant
Norland
N.D.
+6.8
-0.2
+0.7
-0.1
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DDA3937_RS21910
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