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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS21325 and DDA3937_RS21330 are separated by 42 nucleotides
DDA3937_RS21330 and DDA3937_RS21335 are separated by 314 nucleotides
DDA3937_RS21335 and DDA3937_RS21340 are separated by 124 nucleotides
DDA3937_RS21340 and DDA3937_RS21345 are separated by 142 nucleotides
DDA3937_RS21325: DDA3937_RS21325 - helix-turn-helix domain-containing protein, at 4,858,378 to 4,859,355
_RS21325
DDA3937_RS21330: DDA3937_RS21330 - MBL fold metallo-hydrolase, at 4,859,398 to 4,860,171
_RS21330
DDA3937_RS21335: DDA3937_RS21335 - 4-hydroxyphenylpyruvate dioxygenase, at 4,860,486 to 4,861,571
_RS21335
DDA3937_RS21340: DDA3937_RS21340 - helix-turn-helix transcriptional regulator, at 4,861,696 to 4,862,076
_RS21340
DDA3937_RS21345: DDA3937_RS21345 - NAD(P)-dependent oxidoreductase, at 4,862,219 to 4,862,830
_RS21345
Group
Condition
DDA3937
_RS21325
DDA3937
_RS21330
DDA3937
_RS21335
DDA3937
_RS21340
DDA3937
_RS21345
control
PDB
-0.7
+0.8
-0.8
-1.3
-0.2
plant
Stem-Atlantic
-0.8
-0.0
-0.1
-1.4
+0.4
plant
Norland
-0.7
-0.4
-0.3
-0.5
+0.0
plant
Atlantic
-0.5
-0.2
+0.2
-0.5
-0.2
plant
Stem-Atlantic
+0.1
+0.0
-0.0
-0.6
-0.7
plant
Stem-Atlantic
+0.1
-0.3
-0.1
-0.4
-0.4
control
PDB
-0.2
-0.1
+0.1
-0.9
+0.2
carbon source
M9+glucose+arginine
+0.1
-0.2
-0.1
-0.9
+0.1
carbon source
M9+glucose+arginine
+0.3
-0.1
-0.2
-0.8
-0.1
plant
Atlantic
+0.2
+0.0
-0.3
-0.3
-0.3
carbon source
M9+glycerol
+0.3
+0.1
-0.3
-0.9
+0.1
carbon source
M9+sucrose
-0.1
-0.3
-0.0
-0.4
+0.2
control
PDB
+0.1
-0.2
-0.1
-0.7
+0.4
control
PDB
-0.4
+0.0
-0.7
+0.2
+0.2
plant
Stem-Norland
-0.3
+0.4
-0.2
-0.6
+0.1
carbon source
M9+sucrose
+0.2
-0.2
-0.1
-0.5
+0.1
carbon source
M9+glycerol
+0.3
-0.6
+0.0
-0.2
+0.0
plant
Norland
-0.2
-0.1
+0.6
-0.3
-0.3
plant
Stem-Atlantic
+0.3
+0.2
-0.0
-1.0
+0.3
carbon source
M9+glycerol
+0.4
+0.4
-0.2
-0.6
-0.1
control
LB
+0.3
-0.6
-0.1
+0.2
+0.0
plant
Stem-Norland
-1.0
+0.7
+0.0
+0.1
+0.1
plant
Norland
-0.1
+0.5
+0.2
-0.3
-0.1
carbon source
M9+glucose+arginine
-0.3
+0.4
-0.2
+0.1
+0.2
plant
Atlantic
-0.4
-0.4
+0.0
+0.0
+1.0
plant
Stem-Atlantic
-0.4
+1.2
+0.4
-0.7
-0.1
plant
Stem-Norland
+0.6
-0.2
-0.0
+0.4
-0.1
plant
Upstate
+0.2
+0.2
+0.5
-0.3
+0.1
plant
Stem-Norland
+0.1
+0.8
-0.0
-0.1
-0.1
plant
Atlantic
+0.3
+0.3
+0.0
+1.1
-0.1
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