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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS21190 and DDA3937_RS21195 are separated by 34 nucleotides
DDA3937_RS21195 and DDA3937_RS21200 are separated by 670 nucleotides
DDA3937_RS21200 and DDA3937_RS21205 are separated by 2 nucleotides
DDA3937_RS21205 and DDA3937_RS21210 are separated by 199 nucleotides
DDA3937_RS21190: DDA3937_RS21190 - ATP-grasp domain-containing protein, at 4,823,219 to 4,824,625
_RS21190
DDA3937_RS21195: DDA3937_RS21195 - 4Fe-4S cluster-binding domain-containing protein, at 4,824,660 to 4,825,820
_RS21195
DDA3937_RS21200: DDA3937_RS21200 - phosphoserine transaminase, at 4,826,491 to 4,827,612
_RS21200
DDA3937_RS21205: DDA3937_RS21205 - Lrp/AsnC family transcriptional regulator, at 4,827,615 to 4,828,085
_RS21205
DDA3937_RS21210: DDA3937_RS21210 - YitT family protein, at 4,828,285 to 4,828,932
_RS21210
Group
Condition
DDA3937
_RS21190
DDA3937
_RS21195
DDA3937
_RS21200
DDA3937
_RS21205
DDA3937
_RS21210
control
PDB
-0.2
-0.2
+0.4
-1.3
-0.8
plant
Atlantic
+0.1
-0.2
-0.4
-0.9
-0.0
plant
Atlantic
+0.1
-0.6
-0.2
-0.5
-0.2
control
PDB
-0.2
-0.0
+0.2
-0.6
-0.6
plant
Stem-Norland
-0.1
+0.0
-0.0
-1.0
-0.1
plant
Stem-Norland
+0.1
-0.2
-0.2
-0.8
+0.0
carbon source
M9+glycerol
-0.1
-0.7
+0.0
+0.1
-0.4
plant
Upstate
-0.0
-0.4
-0.1
-0.4
-0.1
plant
Stem-Atlantic
-0.3
-0.1
+0.0
-0.6
+0.0
plant
Stem-Atlantic
-0.3
-0.0
+0.0
-0.8
+0.2
plant
Norland
-0.0
+0.3
-0.4
-0.4
+0.0
plant
Atlantic
+0.1
+0.0
-0.3
-0.5
+0.1
plant
Upstate
-0.1
-0.1
-0.0
-0.7
+0.5
control
PDB
+0.2
-0.5
+0.1
-0.2
-0.1
control
PDB
+0.0
-0.1
+0.4
+0.1
-0.7
plant
Stem-Atlantic
-0.0
+0.3
+0.2
-0.7
-0.0
plant
Stem-Atlantic
-0.2
+0.2
+0.1
-0.5
+0.3
carbon source
M9+glucose+arginine
-0.2
+0.0
+0.6
-0.2
-0.3
plant
Stem-Norland
-0.2
+0.2
+0.2
+0.0
-0.4
control
PDB
+0.1
+0.4
+0.0
-0.3
-0.3
carbon source
M9+glucose
+0.1
+0.2
+0.3
-0.1
-0.4
plant
Norland
+0.0
-0.3
+0.1
+0.4
+0.1
plant
Norland
-0.2
-0.1
+0.3
+0.6
-0.2
plant
Norland
-0.1
+0.2
-0.1
+0.5
+0.0
plant
Stem-Atlantic
-0.1
+0.5
-0.2
-0.3
+0.4
plant
Atlantic
+0.1
-0.4
-0.1
+0.6
+0.3
plant
Upstate
-0.1
-0.0
+0.2
+0.6
-0.1
control
PDB
+0.1
-0.3
+0.0
+1.1
-0.3
carbon source
M9+glycerol
-0.3
+0.1
+0.1
+0.9
+0.1
carbon source
M9+glucose+arginine
-0.1
-0.0
+0.4
+0.9
+0.1
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DDA3937_RS21200
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