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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS21075 and DDA3937_RS21080 are separated by 552 nucleotides
DDA3937_RS21080 and DDA3937_RS21085 are separated by 102 nucleotides
DDA3937_RS21085 and DDA3937_RS21090 are separated by 392 nucleotides
DDA3937_RS21090 and DDA3937_RS21095 are separated by 144 nucleotides
DDA3937_RS21075: DDA3937_RS21075 - N-acetyltransferase, at 4,796,825 to 4,797,280
_RS21075
DDA3937_RS21080: DDA3937_RS21080 - glyoxylate/hydroxypyruvate reductase GhrB, at 4,797,833 to 4,798,795
_RS21080
DDA3937_RS21085: DDA3937_RS21085 - aldose 1-epimerase family protein, at 4,798,898 to 4,800,106
_RS21085
DDA3937_RS21090: DDA3937_RS21090 - valine--pyruvate transaminase, at 4,800,499 to 4,801,755
_RS21090
DDA3937_RS21095: DDA3937_RS21095 - DUF1471 domain-containing protein, at 4,801,900 to 4,802,151
_RS21095
Group
Condition
DDA3937
_RS21075
DDA3937
_RS21080
DDA3937
_RS21085
DDA3937
_RS21090
DDA3937
_RS21095
carbon source
M9+glucose+arginine
-0.0
-0.4
+0.0
+0.5
-3.2
plant
Atlantic
-0.2
-0.1
+0.2
+0.0
-3.2
plant
Stem-Atlantic
+0.0
-0.2
-0.2
+0.3
-2.4
plant
Upstate
-0.2
-0.3
+0.0
-0.0
-1.9
control
PDB
-0.6
-0.7
-0.0
+0.2
-1.1
carbon source
M9+glucose
-0.2
-0.4
-0.1
+0.3
-1.5
stress
3.75mM_PTB
-0.2
-0.1
-0.1
-0.1
-1.1
plant
Upstate
-0.3
-0.2
-0.2
+0.2
-0.8
control
PDB
+0.1
-0.1
+0.2
-0.4
-0.8
plant
Upstate
-0.1
+0.1
+0.0
+0.1
-1.0
plant
Norland
-0.4
+0.2
+0.1
+0.2
-1.0
plant
Norland
-0.5
+0.3
+0.1
+0.4
-1.0
carbon source
M9+glucose
+0.1
-0.1
-0.0
+0.4
-1.0
plant
Stem-Atlantic
+0.3
+0.7
-0.3
-0.4
-0.9
plant
Norland
-0.3
-0.4
+0.2
+0.6
-0.7
carbon source
M9+glucose+arginine
-0.0
-0.2
-0.3
+0.6
-0.4
plant
Atlantic
-0.3
-0.3
-0.2
-0.2
+0.7
plant
Stem-Norland
+0.5
-0.6
-0.1
+0.0
+0.2
plant
Upstate
-0.2
-0.5
-0.1
-0.2
+1.2
carbon source
M9+glycerol
-0.2
-0.4
-0.0
-0.0
+0.9
stress
3.75mM_PTB
-0.2
-0.2
-0.0
+0.0
+0.9
control
LB
-0.3
-0.2
+0.1
-0.0
+1.1
plant
Upstate
-0.4
+0.0
+0.1
+0.3
+0.7
carbon source
M9+glycerol
+0.0
-0.3
+0.0
-0.3
+1.6
plant
Stem-Atlantic
-0.1
+0.2
-0.2
-0.4
+1.9
control
PDB
+0.1
-0.6
-0.3
-0.2
+2.4
control
PDB
-0.4
-1.1
+0.1
+0.1
+2.7
plant
Norland
-0.1
+0.2
-0.0
+0.4
+0.9
plant
Norland
+0.1
-0.0
-0.0
+0.2
+1.3
carbon source
M9+glycerol
+0.2
+0.2
-0.0
-0.1
+1.5
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