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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS20825 and DDA3937_RS20830 are separated by 4 nucleotides
DDA3937_RS20830 and DDA3937_RS20835 are separated by 640 nucleotides
DDA3937_RS20835 and DDA3937_RS20840 are separated by 60 nucleotides
DDA3937_RS20840 and DDA3937_RS20845 overlap by 14 nucleotides
DDA3937_RS20825: DDA3937_RS20825 - ABC transporter permease, at 4,731,532 to 4,733,967
_RS20825
DDA3937_RS20830: DDA3937_RS20830 - ABC transporter ATP-binding protein, at 4,733,972 to 4,734,679
_RS20830
DDA3937_RS20835: DDA3937_RS20835 - AraC family transcriptional regulator VfmE, at 4,735,320 to 4,735,883
_RS20835
DDA3937_RS20840: DDA3937_RS20840 - alpha/beta fold hydrolase, at 4,735,944 to 4,737,032
_RS20840
DDA3937_RS20845: DDA3937_RS20845 - multidrug transporter, at 4,737,019 to 4,738,374
_RS20845
Group
Condition
DDA3937
_RS20825
DDA3937
_RS20830
DDA3937
_RS20835
DDA3937
_RS20840
DDA3937
_RS20845
carbon source
M9+glucose+arginine
+0.3
-0.6
-0.9
-0.1
+0.1
carbon source
M9+glucose+arginine
+0.3
-0.5
-0.8
+0.0
-0.2
carbon source
M9+glucose
+0.4
-0.6
-0.7
+0.1
-0.2
carbon source
M9+glucose
+0.4
-0.7
-0.8
+0.2
+0.0
plant
Atlantic
-0.2
+0.8
+0.7
-0.2
-0.2
control
PDB
+0.1
+0.8
+0.4
-0.2
+0.2
plant
Upstate
-0.1
+0.7
+0.5
+0.2
+0.0
plant
Upstate
-0.1
+0.7
+0.8
+0.1
-0.0
plant
Norland
+0.4
+0.8
+0.6
+0.1
-0.3
control
PDB
+0.4
+1.0
+0.6
-0.6
+0.1
plant
Norland
+0.1
+0.9
+0.9
-0.0
-0.2
plant
Atlantic
+0.1
+0.5
+0.9
+0.1
+0.1
control
PDB
+0.5
+0.5
+0.7
+0.1
+0.0
control
LB
+0.5
+0.7
+0.7
-0.1
-0.0
plant
Norland
+0.2
+0.8
+0.9
-0.0
+0.1
plant
Upstate
+0.3
+0.8
+0.7
-0.1
+0.3
control
LB
+0.6
+0.8
+1.0
-0.1
-0.1
control
LB
+0.6
+0.8
+0.9
-0.1
+0.0
plant
Norland
+0.1
+1.2
+1.0
-0.2
+0.5
plant
Norland
+0.0
+0.9
+1.0
+0.2
+0.5
plant
Norland
+0.6
+1.1
+1.1
+0.1
-0.1
carbon source
M9+glycerol
+0.4
+2.7
+2.7
-0.0
-0.2
control
PDB
+1.1
+2.5
+2.4
-0.3
+0.1
control
PDB
+1.1
+2.4
+2.4
-0.3
+0.1
carbon source
M9+glycerol
+0.3
+3.0
+2.9
-0.1
-0.1
control
PDB
+1.2
+2.5
+2.6
-0.4
+0.2
carbon source
M9+glycerol
+0.3
+2.7
+2.7
+0.5
+0.1
carbon source
M9+glycerol
+0.5
+3.1
+2.9
+0.1
+0.0
carbon source
M9+glycerol
+0.8
+3.1
+3.1
-0.2
+0.0
carbon source
M9+glycerol
+0.6
+3.3
+3.3
+0.1
+0.1
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