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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS20805 and DDA3937_RS20810 overlap by 13 nucleotides
DDA3937_RS20810 and DDA3937_RS20815 overlap by 44 nucleotides
DDA3937_RS20815 and DDA3937_RS20820 overlap by 8 nucleotides
DDA3937_RS20820 and DDA3937_RS20825 are separated by 204 nucleotides
DDA3937_RS20805: DDA3937_RS20805 - DUF2807 domain-containing protein, at 4,727,259 to 4,727,900
_RS20805
DDA3937_RS20810: DDA3937_RS20810 - 4'-phosphopantetheinyl transferase superfamily protein, at 4,727,888 to 4,728,658
_RS20810
DDA3937_RS20815: DDA3937_RS20815 - two-component system sensor histidine kinase VfmI, at 4,728,615 to 4,729,934
_RS20815
DDA3937_RS20820: DDA3937_RS20820 - two-component system response regulator VfmH, at 4,729,927 to 4,731,327
_RS20820
DDA3937_RS20825: DDA3937_RS20825 - ABC transporter permease, at 4,731,532 to 4,733,967
_RS20825
Group
Condition
DDA3937
_RS20805
DDA3937
_RS20810
DDA3937
_RS20815
DDA3937
_RS20820
DDA3937
_RS20825
carbon source
M9+glucose+arginine
+0.3
+0.1
-0.9
-1.5
+0.2
carbon source
M9+glucose
-0.3
-0.3
-0.6
-0.6
+0.4
carbon source
M9+glucose+arginine
-0.0
+0.0
-0.8
-0.8
+0.3
carbon source
M9+glucose
-0.4
+0.3
-0.9
-0.8
+0.4
carbon source
M9+glucose+arginine
+0.6
-0.5
-0.7
-0.5
+0.3
plant
Atlantic
-0.5
-0.2
+0.7
+0.7
+0.1
control
PDB
-0.8
-0.5
+1.2
+1.1
+0.4
plant
Upstate
-0.3
+0.2
+0.8
+0.8
-0.1
control
PDB
-0.5
-0.4
+1.0
+0.9
+0.5
plant
Norland
+0.2
-0.4
+0.8
+0.9
+0.0
plant
Upstate
+0.4
-0.2
+0.3
+0.7
+0.3
control
PDB
-0.2
+0.3
+0.9
+0.8
+0.1
control
LB
-0.2
-0.2
+0.9
+0.9
+0.5
plant
Upstate
-0.0
+0.3
+0.9
+0.6
+0.3
plant
Upstate
-0.3
+0.8
+0.8
+0.8
-0.1
plant
Norland
-0.1
+0.3
+1.1
+0.8
+0.2
plant
Atlantic
+1.0
+0.2
+0.4
+0.6
+0.0
control
LB
-0.1
-0.1
+1.0
+1.0
+0.6
plant
Norland
-0.1
+0.2
+1.0
+1.1
+0.1
control
LB
+0.1
+0.1
+1.0
+0.9
+0.6
plant
Norland
-0.1
-0.2
+1.3
+1.3
+0.6
carbon source
M9+glycerol
-0.8
+0.3
+2.9
+2.8
+0.3
carbon source
M9+glycerol
-0.0
+0.1
+2.8
+2.7
+0.4
control
PDB
+0.2
-0.4
+2.5
+2.7
+1.1
control
PDB
-0.3
-0.2
+2.7
+2.7
+1.1
carbon source
M9+glycerol
-1.0
+0.6
+3.0
+3.4
+0.3
control
PDB
-0.1
+0.3
+2.6
+2.5
+1.2
carbon source
M9+glycerol
-0.5
+0.2
+3.0
+3.0
+0.8
carbon source
M9+glycerol
-0.2
+0.4
+3.2
+3.0
+0.5
carbon source
M9+glycerol
+0.2
+0.2
+3.4
+3.5
+0.6
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