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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS20750 and DDA3937_RS20755 are separated by 5 nucleotides
DDA3937_RS20755 and DDA3937_RS20760 overlap by 4 nucleotides
DDA3937_RS20760 and DDA3937_RS20765 overlap by 20 nucleotides
DDA3937_RS20765 and DDA3937_RS20770 are separated by 97 nucleotides
DDA3937_RS20750: DDA3937_RS20750 - acyl--CoA ligase, at 4,715,653 to 4,717,236
_RS20750
DDA3937_RS20755: DDA3937_RS20755 - acyl carrier protein, at 4,717,242 to 4,717,550
_RS20755
DDA3937_RS20760: DDA3937_RS20760 - AMP-binding protein, at 4,717,547 to 4,719,091
_RS20760
DDA3937_RS20765: DDA3937_RS20765 - AMP-binding protein, at 4,719,072 to 4,720,595
_RS20765
DDA3937_RS20770: DDA3937_RS20770 - VOC family protein, at 4,720,693 to 4,721,124
_RS20770
Group
Condition
DDA3937
_RS20750
DDA3937
_RS20755
DDA3937
_RS20760
DDA3937
_RS20765
DDA3937
_RS20770
control
PDB
+0.2
+0.3
-0.2
-0.5
-1.1
plant
Stem-Norland
-0.0
+0.2
+0.2
-0.1
-1.5
control
PDB
+0.1
+1.0
+0.1
-0.2
-1.8
control
PDB
+0.1
-0.2
+0.3
-0.2
-0.5
carbon source
M9+glucose
+0.3
+0.0
+0.1
-0.2
-0.7
plant
Stem-Norland
+0.2
+0.0
+0.0
+0.3
-0.9
carbon source
M9+sucrose
+0.3
+0.2
+0.0
+0.0
-0.7
plant
Stem-Norland
+0.0
+0.4
-0.1
-0.1
-0.4
carbon source
M9+glucose
+0.3
+0.2
+0.5
-0.0
-1.0
plant
Stem-Atlantic
+0.3
-0.2
+0.3
+0.0
-0.3
plant
Upstate
+0.2
+0.5
+0.1
-0.0
-0.6
carbon source
M9+glycerol
+0.4
-0.3
+0.3
+0.4
-0.4
control
PDB
-0.0
+0.2
-0.2
-0.3
+0.6
carbon source
M9+glycerol
+0.2
+0.6
+0.4
+0.2
-1.0
carbon source
M9+glucose+arginine
+0.4
+0.0
+0.3
-0.1
-0.3
plant
Norland
+0.2
-0.0
+0.0
-0.2
+0.8
carbon source
M9+glucose
+0.4
+0.6
+0.3
+0.0
-0.6
plant
Norland
+0.2
+0.4
+0.2
-0.2
+0.6
carbon source
M9+glycerol
+0.2
+0.3
+0.4
+0.3
+0.0
plant
Stem-Norland
+0.0
+0.9
-0.0
+0.2
+0.3
carbon source
M9+glycerol
+0.1
+0.5
+0.6
+0.2
-0.1
plant
Upstate
+0.2
+0.1
+0.1
+0.0
+1.0
plant
Upstate
+0.2
+0.4
+0.0
+0.1
+0.8
plant
Atlantic
+0.1
+1.0
+0.1
-0.1
+0.5
carbon source
M9+glucose+arginine
+0.3
+0.7
+0.5
-0.1
+0.2
carbon source
M9+glycerol
+0.3
+0.0
+0.6
+0.4
+0.3
plant
Upstate
+0.1
+0.9
+0.1
+0.0
+0.6
plant
Atlantic
+0.3
+0.6
+0.2
-0.1
+0.7
carbon source
M9+glycerol
+0.3
+0.7
+0.7
+0.3
-0.1
plant
Norland
+0.2
+0.3
+0.1
+0.1
+1.5
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DDA3937_RS20760
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