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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS20580 and DDA3937_RS20585 are separated by 11 nucleotides
DDA3937_RS20585 and DDA3937_RS20590 are separated by 32 nucleotides
DDA3937_RS20590 and DDA3937_RS20595 are separated by 381 nucleotides
DDA3937_RS20595 and DDA3937_RS20600 are separated by 323 nucleotides
DDA3937_RS20580: DDA3937_RS20580 - ABC transporter permease subunit, at 4,681,976 to 4,682,878
_RS20580
DDA3937_RS20585: DDA3937_RS20585 - P1 family peptidase, at 4,682,890 to 4,683,948
_RS20585
DDA3937_RS20590: DDA3937_RS20590 - M55 family metallopeptidase, at 4,683,981 to 4,684,802
_RS20590
DDA3937_RS20595: DDA3937_RS20595 - isoaspartyl peptidase/L-asparaginase, at 4,685,184 to 4,686,143
_RS20595
DDA3937_RS20600: DDA3937_RS20600 - sulfotransferase family 2 domain-containing protein, at 4,686,467 to 4,687,786
_RS20600
Group
Condition
DDA3937
_RS20580
DDA3937
_RS20585
DDA3937
_RS20590
DDA3937
_RS20595
DDA3937
_RS20600
control
PDB
-0.9
+0.2
-0.2
-0.5
-0.2
plant
Stem-Atlantic
-0.5
-0.9
-0.1
-0.2
-0.0
stress
3.75mM_PTB
-0.2
+0.1
-0.1
-0.0
-0.9
plant
Upstate
-0.2
-0.1
-0.3
-0.4
-0.0
stress
7.5mM_PTB
-0.0
-0.1
-0.0
+0.0
-0.9
plant
Norland
+0.2
-0.7
-0.1
-0.2
-0.2
plant
Atlantic
-0.3
-0.2
-0.2
+0.1
-0.2
stress
7.5mM_PTB
+0.1
+0.0
-0.1
+0.1
-1.0
control
PDB
-0.4
+0.1
-0.1
+0.2
-0.5
plant
Stem-Atlantic
+0.3
-0.2
-0.5
-0.2
-0.2
carbon source
M9+glycerol
+0.0
-0.5
-0.2
+0.1
-0.2
stress
7.5mM_PTB
+0.1
+0.2
+0.0
-0.1
-0.9
stress
3.75mM_PTB
-0.0
+0.2
-0.2
-0.0
-0.6
stress
3.75mM_PTB
-0.3
+0.1
+0.1
+0.1
-0.7
plant
Atlantic
-0.4
+0.2
-0.2
-0.1
-0.1
plant
Stem-Norland
-0.3
+0.3
-0.4
-0.0
-0.1
control
PDB
-0.3
+0.2
-0.1
+0.3
-0.5
plant
Norland
-0.5
+0.5
-0.4
+0.1
-0.1
plant
Atlantic
-0.2
+0.3
-0.2
-0.0
-0.3
stress
7.5mM_PTB
+0.2
+0.0
+0.0
+0.1
-0.7
plant
Upstate
-0.3
+0.4
-0.3
-0.1
-0.0
stress
3.75mM_PTB
+0.2
+0.0
-0.0
+0.1
-0.6
control
PDB
-0.4
+0.5
+0.2
+0.1
-0.5
carbon source
M9+glycerol
+0.1
+0.4
-0.6
+0.1
-0.0
carbon source
M9+glycerol
+0.4
+0.0
+0.1
-0.1
-0.4
control
PDB
+0.3
+0.1
+0.2
-0.0
-0.3
plant
Stem-Norland
+0.5
+0.1
-0.3
+0.1
+0.1
plant
Norland
+0.3
+0.5
-0.3
+0.2
-0.1
plant
Stem-Norland
+0.5
+0.5
+0.1
+0.2
-0.3
plant
Atlantic
+0.5
+0.5
+0.4
-0.0
+0.2
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DDA3937_RS20590
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