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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS20540 and DDA3937_RS20545 are separated by 180 nucleotides
DDA3937_RS20545 and DDA3937_RS20550 are separated by 6 nucleotides
DDA3937_RS20550 and DDA3937_RS20555 are separated by 251 nucleotides
DDA3937_RS20555 and DDA3937_RS20560 are separated by 4 nucleotides
DDA3937_RS20540: DDA3937_RS20540 - ribonuclease PH, at 4,673,502 to 4,674,218
_RS20540
DDA3937_RS20545: DDA3937_RS20545 - DUF202 domain-containing protein, at 4,674,399 to 4,674,800
_RS20545
DDA3937_RS20550: DDA3937_RS20550 - DUF202 domain-containing protein, at 4,674,807 to 4,675,139
_RS20550
DDA3937_RS20555: DDA3937_RS20555 - DUF1611 domain-containing protein, at 4,675,391 to 4,676,398
_RS20555
DDA3937_RS20560: DDA3937_RS20560 - L-Ala-D/L-Glu epimerase, at 4,676,403 to 4,677,368
_RS20560
Group
Condition
DDA3937
_RS20540
DDA3937
_RS20545
DDA3937
_RS20550
DDA3937
_RS20555
DDA3937
_RS20560
plant
Stem-Norland
+0.0
-1.1
-0.0
+0.2
-0.3
carbon source
M9+glycerol
+0.5
-0.2
-0.4
+0.0
-1.1
carbon source
M9+glucose
-1.1
+0.0
+0.5
+0.0
-0.3
plant
Upstate
+0.3
-1.1
+0.2
+0.1
-0.2
carbon source
M9+glycerol
+0.1
-1.7
+0.3
+0.3
+0.7
carbon source
M9+glucose+arginine
-0.9
+0.4
+0.5
-0.1
-0.1
plant
Norland
-0.2
+0.9
-0.3
+0.2
-0.7
plant
Atlantic
+0.4
+0.3
-0.0
+0.1
-0.8
control
PDB
+0.7
-1.2
+0.1
+0.1
+0.3
plant
Stem-Atlantic
-0.7
-0.1
-0.1
+0.2
+0.8
plant
Stem-Atlantic
-1.0
-0.2
+0.1
+0.1
+1.1
control
PDB
+0.3
+0.4
+0.1
+0.3
-0.7
plant
Stem-Atlantic
-0.4
-0.1
+0.2
+0.1
+0.8
plant
Upstate
-0.3
+0.5
-0.1
-0.1
+0.7
carbon source
M9+glucose
-1.0
+0.0
+0.5
+0.3
+0.9
plant
Stem-Norland
-0.9
+0.5
+0.0
+0.1
+1.0
carbon source
M9+glucose+arginine
-1.1
+0.1
+0.7
+0.1
+1.0
carbon source
M9+glucose
-1.3
+0.6
+0.6
+0.2
+0.9
plant
Stem-Atlantic
-0.4
-1.0
+0.5
+0.2
+2.0
plant
Stem-Norland
-0.5
+1.5
+0.4
+0.2
-0.2
carbon source
M9+glycerol
-0.1
-0.1
+0.2
+0.4
+1.3
plant
Upstate
+0.1
+0.3
+0.0
-0.0
+1.1
plant
Upstate
-0.0
+0.3
+0.2
+0.3
+0.9
plant
Stem-Atlantic
-0.5
+0.1
-0.1
+0.1
+2.1
plant
Norland
+0.3
+0.9
+0.4
-0.1
+0.4
carbon source
M9+glucose+arginine
-0.8
+0.7
+0.7
+0.0
+1.5
carbon source
M9+glycerol
+0.4
-0.1
+0.0
+0.4
+1.9
carbon source
M9+glycerol
-0.0
+0.9
-0.3
+0.3
+1.7
control
PDB
+0.7
+0.3
+0.2
+0.1
+1.5
carbon source
M9+glycerol
+0.3
+0.2
+0.0
+0.4
+2.1
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DDA3937_RS20550
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