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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS20155 and DDA3937_RS20160 are separated by 73 nucleotides
DDA3937_RS20160 and DDA3937_RS20165 are separated by 24 nucleotides
DDA3937_RS20165 and DDA3937_RS20170 are separated by 17 nucleotides
DDA3937_RS20170 and DDA3937_RS22530 are separated by 139 nucleotides
DDA3937_RS20155: DDA3937_RS20155 - dihydroxy-acid dehydratase, at 4,593,115 to 4,594,965
_RS20155
DDA3937_RS20160: DDA3937_RS20160 - branched-chain-amino-acid transaminase, at 4,595,039 to 4,595,965
_RS20160
DDA3937_RS20165: DDA3937_RS20165 - acetolactate synthase 2 small subunit, at 4,595,990 to 4,596,247
_RS20165
DDA3937_RS20170: DDA3937_RS20170 - acetolactate synthase 2 catalytic subunit, at 4,596,265 to 4,597,911
_RS20170
DDA3937_RS22530: DDA3937_RS22530 - ilv operon leader peptide, at 4,598,051 to 4,598,149
_RS22530
Group
Condition
DDA3937
_RS20155
DDA3937
_RS20160
DDA3937
_RS20165
DDA3937
_RS20170
DDA3937
_RS22530
carbon source
M9+glucose
-3.9
-1.2
-2.5
-1.5
-0.8
carbon source
M9+glucose+arginine
-3.3
-1.1
-2.0
-1.6
-1.2
carbon source
M9+glucose
-3.8
-1.0
-2.1
-1.4
-0.7
carbon source
M9+glucose+arginine
-3.1
-1.0
-1.9
-1.7
-1.1
carbon source
M9+glucose
-3.3
-1.0
-2.5
-1.3
-0.7
carbon source
M9+sucrose
-4.2
-0.7
-1.5
-1.2
-0.2
carbon source
M9+polygalacturonate
-4.2
-0.7
-0.9
-1.4
-0.0
carbon source
M9+polygalacturonate
-4.0
-0.6
-1.1
-1.0
-0.2
carbon source
M9+polygalacturonate
-3.7
-0.6
-1.1
-1.2
-0.3
carbon source
M9+sucrose
-4.2
-0.6
-1.2
-0.9
+0.1
carbon source
M9+sucrose
-4.1
-0.4
-1.4
-1.0
+0.1
carbon source
M9+glucose+arginine
-2.6
-1.0
-1.8
-1.1
-0.3
carbon source
M9+starch
-3.7
-0.8
-0.2
-1.0
+0.1
carbon source
M9+starch
-3.9
-0.9
-0.2
-0.6
+0.2
carbon source
M9+glycerol
-3.9
-0.7
-0.3
-0.4
-0.0
carbon source
M9+starch
-3.9
-0.6
-0.3
-0.7
+0.4
carbon source
M9+glycerol
-4.1
-0.6
-0.3
-0.3
+0.4
carbon source
M9+glycerol
-3.4
-0.9
-0.5
-0.5
+0.4
plant
Stem-Atlantic
-3.5
-0.3
-0.5
+0.2
-0.7
plant
Stem-Atlantic
-2.5
-0.2
-0.6
-0.2
-0.3
plant
Atlantic
-1.8
-0.6
-0.8
-0.8
+0.3
plant
Stem-Norland
-1.8
-0.4
-0.4
-0.2
-0.8
plant
Stem-Atlantic
-2.8
-0.3
-0.3
-0.0
-0.0
carbon source
M9+glycerol
-2.9
-0.4
-0.0
-0.1
-0.0
plant
Stem-Norland
-1.4
-0.2
+0.2
-0.0
-1.7
plant
Stem-Norland
-2.1
-0.4
+0.2
-0.3
-0.4
plant
Stem-Atlantic
-2.6
-0.2
-0.2
+0.2
+0.4
plant
Atlantic
-1.6
-0.7
-0.1
-0.5
+0.5
carbon source
M9+glycerol
-3.0
-0.3
+0.8
+0.6
+0.1
carbon source
M9+glycerol
-2.4
-0.2
+1.0
+0.7
+1.5
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