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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS20125 and DDA3937_RS20130 are separated by 91 nucleotides
DDA3937_RS20130 and DDA3937_RS20135 are separated by 169 nucleotides
DDA3937_RS20135 and DDA3937_RS20140 overlap by 1 nucleotides
DDA3937_RS20140 and DDA3937_RS20145 are separated by 3 nucleotides
DDA3937_RS20125: DDA3937_RS20125 - hypothetical protein, at 4,586,869 to 4,587,270
_RS20125
DDA3937_RS20130: DDA3937_RS20130 - ketol-acid reductoisomerase, at 4,587,362 to 4,588,840
_RS20130
DDA3937_RS20135: DDA3937_RS20135 - HTH-type transcriptional activator IlvY, at 4,589,010 to 4,589,897
_RS20135
DDA3937_RS20140: DDA3937_RS20140 - hypothetical protein, at 4,589,897 to 4,590,661
_RS20140
DDA3937_RS20145: DDA3937_RS20145 - DUF2461 domain-containing protein, at 4,590,665 to 4,591,405
_RS20145
Group
Condition
DDA3937
_RS20125
DDA3937
_RS20130
DDA3937
_RS20135
DDA3937
_RS20140
DDA3937
_RS20145
carbon source
M9+sucrose
+0.2
-4.7
-1.8
-0.1
+0.2
carbon source
M9+glucose
-0.2
-4.1
-1.4
-0.4
+0.3
carbon source
M9+sucrose
-0.0
-3.9
-1.5
-0.2
+0.1
carbon source
M9+sucrose
+0.1
-4.3
-0.9
-0.1
+0.1
carbon source
M9+polygalacturonate
+0.2
-4.3
-1.0
-0.2
+0.2
carbon source
M9+starch
-0.3
-3.9
-0.7
-0.1
+0.1
carbon source
M9+glucose
+0.0
-3.6
-1.2
-0.1
+0.0
carbon source
M9+polygalacturonate
+0.1
-4.1
-0.8
-0.1
+0.2
carbon source
M9+polygalacturonate
+0.0
-3.4
-1.3
+0.2
+0.1
plant
Stem-Atlantic
-0.7
-3.1
-0.4
+0.1
+0.1
carbon source
M9+starch
+0.3
-3.6
-0.7
+0.0
+0.1
carbon source
M9+glucose+arginine
+0.2
-2.8
-1.1
-0.1
-0.1
carbon source
M9+glucose
-0.0
-2.8
-0.9
-0.3
+0.2
carbon source
M9+glycerol
+0.1
-3.3
-0.1
-0.1
-0.4
carbon source
M9+starch
+0.2
-3.8
-0.6
+0.2
+0.4
carbon source
M9+glycerol
+0.3
-3.4
-0.4
+0.0
-0.1
carbon source
M9+glucose+arginine
+0.3
-2.4
-1.0
-0.6
+0.4
plant
Stem-Atlantic
+0.1
-2.6
-0.6
-0.1
-0.2
carbon source
M9+glucose+arginine
+0.2
-2.3
-1.4
+0.1
+0.0
carbon source
M9+glycerol
-0.8
-1.7
-0.4
-0.3
+0.2
carbon source
M9+glycerol
+0.2
-3.0
-0.2
+0.1
-0.1
plant
Stem-Atlantic
-0.1
-3.2
+0.1
+0.1
+0.0
plant
Stem-Atlantic
+0.5
-3.0
-0.5
-0.0
-0.0
carbon source
M9+glycerol
+0.2
-2.3
-0.5
-0.1
-0.0
plant
Atlantic
+0.1
-1.8
-1.1
+0.3
-0.0
carbon source
M9+glycerol
+0.4
-2.1
-0.6
-0.1
-0.3
plant
Atlantic
+0.2
-2.1
-0.6
+0.3
-0.1
plant
Stem-Norland
+0.7
-1.5
-0.4
-0.4
+0.2
plant
Stem-Atlantic
+0.9
-1.7
-0.1
+0.0
-0.2
plant
Atlantic
+0.8
-0.7
+0.9
-0.1
-0.3
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