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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS19725 and DDA3937_RS19730 are separated by 22 nucleotides
DDA3937_RS19730 and DDA3937_RS19735 are separated by 76 nucleotides
DDA3937_RS19735 and DDA3937_RS19740 are separated by 13 nucleotides
DDA3937_RS19740 and DDA3937_RS19745 overlap by 1 nucleotides
DDA3937_RS19725: DDA3937_RS19725 - glycogen phosphorylase, at 4,488,453 to 4,490,900
_RS19725
DDA3937_RS19730: DDA3937_RS19730 - glycogen synthase GlgA, at 4,490,923 to 4,492,356
_RS19730
DDA3937_RS19735: DDA3937_RS19735 - glucose-1-phosphate adenylyltransferase, at 4,492,433 to 4,493,719
_RS19735
DDA3937_RS19740: DDA3937_RS19740 - glycogen debranching protein GlgX, at 4,493,733 to 4,495,703
_RS19740
DDA3937_RS19745: DDA3937_RS19745 - 1,4-alpha-glucan branching protein GlgB, at 4,495,703 to 4,497,886
_RS19745
Group
Condition
DDA3937
_RS19725
DDA3937
_RS19730
DDA3937
_RS19735
DDA3937
_RS19740
DDA3937
_RS19745
carbon source
M9+starch
-3.4
-0.7
-1.3
-1.4
-1.4
carbon source
M9+starch
-2.9
-0.8
-1.0
-1.1
-1.5
carbon source
M9+starch
-2.7
-0.6
-1.0
-1.1
-1.3
plant
Stem-Norland
-0.6
-0.4
-0.5
-0.3
-0.0
plant
Upstate
-0.5
+0.0
-0.1
-0.5
-0.4
plant
Atlantic
-0.2
-0.3
-0.2
-0.3
-0.0
carbon source
M9+glycerol
-0.3
-0.0
+0.1
-0.6
-0.2
plant
Norland
-0.2
-0.3
-0.3
-0.1
-0.2
carbon source
M9+polygalacturonate
-0.2
-0.3
-0.0
-0.2
-0.2
plant
Stem-Norland
-0.1
-0.5
-0.1
-0.1
-0.0
plant
Norland
+0.1
-0.2
-0.3
-0.2
-0.2
plant
Upstate
-0.0
-0.2
-0.2
-0.3
-0.2
carbon source
M9+polygalacturonate
-0.3
-0.2
-0.1
-0.1
-0.1
plant
Upstate
-0.2
-0.4
-0.0
+0.1
-0.3
plant
Norland
-0.2
-0.2
-0.0
-0.0
-0.2
plant
Norland
-0.2
-0.3
-0.1
-0.1
+0.2
carbon source
M9+glycerol
+0.1
-0.2
-0.1
-0.0
-0.3
carbon source
M9+glucose+arginine
-0.2
+0.2
+0.0
-0.1
-0.3
plant
Stem-Atlantic
+0.1
-0.0
+0.2
-0.3
-0.1
plant
Atlantic
-0.4
+0.6
-0.0
-0.2
-0.0
plant
Stem-Atlantic
+0.2
+0.2
-0.2
+0.2
-0.0
control
PDB
-0.4
+0.3
+0.1
+0.0
+0.4
control
LB
-0.0
+0.2
+0.2
+0.0
+0.3
control
LB
+0.0
+0.2
+0.2
+0.0
+0.3
control
PDB
-0.2
+0.5
+0.0
+0.2
+0.4
plant
Stem-Atlantic
+0.2
+0.1
+0.3
-0.0
+0.2
control
LB
+0.1
+0.3
+0.1
+0.3
+0.3
control
PDB
-0.0
+0.3
+0.4
+0.1
+0.3
control
PDB
-0.2
+0.4
+0.5
+0.2
+0.3
control
PDB
-0.1
+0.2
+0.2
+0.6
+0.5
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