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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS19640 and DDA3937_RS19645 are separated by 261 nucleotides
DDA3937_RS19645 and DDA3937_RS19650 are separated by 78 nucleotides
DDA3937_RS19650 and DDA3937_RS19655 are separated by 56 nucleotides
DDA3937_RS19655 and DDA3937_RS19660 are separated by 169 nucleotides
DDA3937_RS19640: DDA3937_RS19640 - hypothetical protein, at 4,469,617 to 4,470,117
_RS19640
DDA3937_RS19645: DDA3937_RS19645 - pimeloyl-ACP methyl ester esterase BioH, at 4,470,379 to 4,471,152
_RS19645
DDA3937_RS19650: DDA3937_RS19650 - DNA utilization protein GntX, at 4,471,231 to 4,471,935
_RS19650
DDA3937_RS19655: DDA3937_RS19655 - Fe-S biogenesis protein NfuA, at 4,471,992 to 4,472,567
_RS19655
DDA3937_RS19660: DDA3937_RS19660 - 4-alpha-glucanotransferase, at 4,472,737 to 4,474,923
_RS19660
Group
Condition
DDA3937
_RS19640
DDA3937
_RS19645
DDA3937
_RS19650
DDA3937
_RS19655
DDA3937
_RS19660
plant
Stem-Norland
-0.3
-1.0
-0.6
N.D.
-1.5
carbon source
M9+starch
-0.9
-0.3
-0.0
N.D.
-2.1
carbon source
M9+starch
-0.7
-0.3
-0.0
N.D.
-2.1
carbon source
M9+starch
-0.5
+0.1
-0.1
N.D.
-2.6
plant
Stem-Atlantic
-0.4
+0.3
+0.3
N.D.
-3.2
control
PDB
-3.0
-0.0
+0.1
N.D.
-0.0
plant
Stem-Atlantic
-0.5
-1.1
+0.8
N.D.
-1.8
plant
Stem-Atlantic
+0.2
-1.5
+0.6
N.D.
-1.7
plant
Stem-Norland
-0.1
+0.1
-0.7
N.D.
-1.7
carbon source
M9+glucose+arginine
-0.1
-1.6
-0.2
N.D.
-0.5
carbon source
M9+glucose
-0.5
-1.1
+0.1
N.D.
-0.7
plant
Stem-Atlantic
-0.6
+0.3
+0.9
N.D.
-2.7
plant
Stem-Norland
+0.7
-0.4
-0.4
N.D.
-1.6
plant
Atlantic
-0.9
-0.1
-1.1
N.D.
+0.5
plant
Stem-Atlantic
+0.2
+0.3
+0.3
N.D.
-2.3
carbon source
M9+glucose+arginine
-0.4
-0.9
+0.6
N.D.
-0.7
control
PDB
-1.4
+0.5
-0.4
N.D.
+0.0
plant
Norland
-0.4
-1.1
-0.6
N.D.
+0.9
plant
Norland
-0.5
-0.3
-1.0
N.D.
+0.7
plant
Stem-Norland
-0.3
+1.5
+1.0
N.D.
-2.4
plant
Norland
-0.5
-0.5
-0.1
N.D.
+1.2
plant
Atlantic
-0.3
+1.5
-0.8
N.D.
+0.0
plant
Upstate
-0.6
-0.3
+0.4
N.D.
+1.5
carbon source
M9+glycerol
-0.8
-0.3
-0.2
N.D.
+2.4
carbon source
M9+glycerol
+0.1
-0.5
-0.4
N.D.
+1.9
carbon source
M9+glycerol
-0.6
+0.1
-0.3
N.D.
+2.0
plant
Upstate
-0.2
-0.5
+1.3
N.D.
+0.7
plant
Upstate
-0.1
+0.2
+1.5
N.D.
+0.7
carbon source
M9+glycerol
+0.0
+0.2
+0.4
N.D.
+2.3
carbon source
M9+glycerol
-0.1
+0.9
+0.5
N.D.
+2.3
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