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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS19405 and DDA3937_RS19410 are separated by 3 nucleotides
DDA3937_RS19410 and DDA3937_RS19415 are separated by 124 nucleotides
DDA3937_RS19415 and DDA3937_RS19420 are separated by 65 nucleotides
DDA3937_RS19420 and DDA3937_RS19425 are separated by 119 nucleotides
DDA3937_RS19405: DDA3937_RS19405 - glutathione-regulated potassium-efflux system protein KefB, at 4,411,757 to 4,413,562
_RS19405
DDA3937_RS19410: DDA3937_RS19410 - glutathione-regulated potassium-efflux system ancillary protein KefG, at 4,413,566 to 4,414,117
_RS19410
DDA3937_RS19415: DDA3937_RS19415 - ABC transporter ATP-binding protein, at 4,414,242 to 4,416,161
_RS19415
DDA3937_RS19420: DDA3937_RS19420 - LysE family translocator, at 4,416,227 to 4,416,832
_RS19420
DDA3937_RS19425: DDA3937_RS19425 - hydrolase, at 4,416,952 to 4,417,950
_RS19425
Group
Condition
DDA3937
_RS19405
DDA3937
_RS19410
DDA3937
_RS19415
DDA3937
_RS19420
DDA3937
_RS19425
carbon source
M9+glycerol
+0.1
-0.0
-0.3
-0.2
-0.6
plant
Upstate
-0.1
-0.1
-0.3
-0.1
+0.1
carbon source
M9+glucose+arginine
-0.6
-0.3
+0.1
+0.2
+0.0
carbon source
M9+glucose+arginine
-0.2
-0.3
-0.1
+0.2
+0.1
carbon source
M9+glycerol
+0.1
+0.0
-0.2
+0.1
-0.3
carbon source
M9+polygalacturonate
+0.0
-0.1
-0.3
+0.1
+0.1
carbon source
M9+glucose+arginine
-0.2
-0.2
+0.1
+0.2
-0.0
carbon source
M9+glycerol
+0.2
+0.4
-0.0
-0.0
-0.6
plant
Stem-Atlantic
+0.0
+0.2
+0.3
-0.2
-0.3
carbon source
M9+glucose
-0.2
-0.2
+0.1
+0.1
+0.3
carbon source
M9+starch
+0.2
+0.2
+0.1
+0.1
-0.3
plant
Atlantic
-0.0
+0.3
-0.1
-0.0
+0.2
plant
Atlantic
-0.0
+0.0
-0.2
+0.3
+0.3
carbon source
M9+starch
+0.3
+0.3
-0.2
-0.1
+0.1
plant
Atlantic
+0.1
+0.2
-0.1
+0.3
-0.0
plant
Stem-Norland
+0.3
+0.3
-0.3
+0.0
+0.1
control
LB
+0.2
+0.2
-0.1
+0.2
+0.1
control
LB
+0.4
+0.3
-0.1
+0.1
+0.1
plant
Stem-Norland
+0.1
-0.0
+0.3
+0.1
+0.3
control
LB
+0.2
+0.3
+0.1
+0.1
+0.1
plant
Norland
-0.0
+0.1
+0.0
+0.2
+0.6
control
LB
+0.3
+0.3
-0.1
+0.1
+0.3
control
PDB
+0.4
+0.4
+0.0
-0.2
+0.3
control
LB
+0.4
+0.3
+0.1
+0.1
+0.2
control
PDB
+0.5
+0.4
+0.2
+0.1
-0.1
plant
Stem-Norland
+0.3
+0.4
-0.1
+0.3
+0.1
control
PDB
+0.5
+0.5
+0.3
-0.0
-0.1
control
PDB
+0.4
+0.5
-0.1
+0.1
+0.2
control
PDB
+0.6
+0.3
+0.2
+0.2
+0.0
control
PDB
+0.4
+0.5
+0.2
+0.1
+0.8
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DDA3937_RS19415
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