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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS18845 and DDA3937_RS18850 are separated by 12 nucleotides
DDA3937_RS18850 and DDA3937_RS18855 are separated by 35 nucleotides
DDA3937_RS18855 and DDA3937_RS18860 are separated by 464 nucleotides
DDA3937_RS18860 and DDA3937_RS22485 overlap by 4 nucleotides
DDA3937_RS18845: DDA3937_RS18845 - homocitrate synthase, at 4,304,852 to 4,306,000
_RS18845
DDA3937_RS18850: DDA3937_RS18850 - cysteine desulfurase NifS, at 4,306,013 to 4,307,257
_RS18850
DDA3937_RS18855: DDA3937_RS18855 - Fe-S cluster assembly protein NifU, at 4,307,293 to 4,308,120
_RS18855
DDA3937_RS18860: DDA3937_RS18860 - glycoside hydrolase family protein, at 4,308,585 to 4,309,388
_RS18860
DDA3937_RS22485: DDA3937_RS22485 - hypothetical protein, at 4,309,385 to 4,309,789
_RS22485
Group
Condition
DDA3937
_RS18845
DDA3937
_RS18850
DDA3937
_RS18855
DDA3937
_RS18860
DDA3937
_RS22485
plant
Norland
+0.0
-0.2
+0.0
-0.3
-2.3
control
PDB
+0.1
-0.2
-0.6
-0.2
-1.5
plant
Stem-Atlantic
-0.1
+0.4
-0.1
-0.7
-1.6
plant
Upstate
+0.3
+0.0
+0.1
-0.2
-2.1
plant
Stem-Norland
-0.4
-0.2
-0.0
-0.5
-0.6
plant
Upstate
-0.0
-0.3
-0.1
-0.2
-1.2
carbon source
M9+glucose+arginine
-0.5
+0.1
-0.2
-0.4
-0.6
carbon source
M9+glucose+arginine
-0.3
+0.0
+0.0
-0.2
-1.2
carbon source
M9+glucose
-0.4
-0.1
-0.2
-0.1
-0.8
plant
Stem-Atlantic
-0.6
-0.2
+0.6
+0.3
-1.6
carbon source
M9+glycerol
-0.3
-0.0
-0.3
+0.2
-1.1
control
PDB
+0.4
+0.1
+0.6
-0.0
-2.4
carbon source
M9+polygalacturonate
-0.1
+0.2
-0.1
+0.1
-1.5
plant
Upstate
-0.0
-0.1
-0.0
+0.1
-1.3
carbon source
M9+glycerol
-0.5
-0.3
+0.1
+0.1
-0.6
plant
Upstate
+0.3
+0.3
-0.3
+0.2
-1.6
carbon source
M9+starch
+0.5
-0.2
-0.0
-0.0
-1.2
carbon source
M9+polygalacturonate
-0.3
+0.2
-0.3
+0.1
-0.7
plant
Atlantic
+0.2
-0.5
+0.6
+0.4
-1.7
plant
Norland
+0.3
-0.2
+0.4
+0.0
-1.3
control
PDB
+0.9
-0.2
-0.2
-0.5
-0.4
plant
Norland
-0.2
+0.2
+0.3
+0.5
-1.2
plant
Atlantic
+0.4
+0.4
+0.2
-0.2
-1.2
plant
Upstate
+0.4
+0.1
+0.2
-0.1
-0.9
control
PDB
+0.4
-0.1
-0.2
-0.8
+0.4
carbon source
M9+glycerol
-0.4
-0.4
-0.0
+0.3
+0.6
control
PDB
+0.5
+0.2
+0.1
-1.1
+0.6
control
PDB
+1.2
+0.4
-0.8
-0.7
+0.3
plant
Atlantic
+0.6
+0.6
+0.2
-0.0
-0.9
plant
Norland
-0.1
-0.1
+1.2
-0.1
-0.1
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DDA3937_RS18855
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