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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS18790 and DDA3937_RS18795 are separated by 808 nucleotides
DDA3937_RS18795 and DDA3937_RS18800 overlap by 1 nucleotides
DDA3937_RS18800 and DDA3937_RS18805 are separated by 268 nucleotides
DDA3937_RS18805 and DDA3937_RS18810 overlap by 4 nucleotides
DDA3937_RS18790: DDA3937_RS18790 - IS110-like element ISEch3 family transposase, at 4,293,002 to 4,294,021
_RS18790
DDA3937_RS18795: DDA3937_RS18795 - nitrogen fixation protein NifQ, at 4,294,830 to 4,295,351
_RS18795
DDA3937_RS18800: DDA3937_RS18800 - nitrogenase cofactor biosynthesis protein NifB, at 4,295,351 to 4,296,748
_RS18800
DDA3937_RS18805: DDA3937_RS18805 - nif-specific transcriptional activator NifA, at 4,297,017 to 4,298,588
_RS18805
DDA3937_RS18810: DDA3937_RS18810 - nitrogen fixation negative regulator NifL, at 4,298,585 to 4,300,114
_RS18810
Group
Condition
DDA3937
_RS18790
DDA3937
_RS18795
DDA3937
_RS18800
DDA3937
_RS18805
DDA3937
_RS18810
plant
Stem-Norland
-0.6
-0.1
-0.3
+0.4
-0.7
plant
Stem-Atlantic
-0.9
+0.2
-0.2
+0.1
-0.2
control
PDB
-0.3
-0.7
-0.0
+0.3
-0.3
control
PDB
-1.4
+0.9
-0.4
-0.2
+0.2
plant
Stem-Atlantic
+0.9
-0.2
-0.5
-0.6
-0.2
control
PDB
+1.0
-0.8
+0.2
-0.8
+0.1
control
PDB
-0.5
-0.6
+0.5
+0.5
-0.0
carbon source
M9+starch
-0.3
+0.5
+0.0
+0.0
-0.4
carbon source
M9+glycerol
+0.3
-0.3
+0.3
-0.2
-0.1
plant
Atlantic
+0.5
-0.4
+0.2
-0.1
+0.1
carbon source
M9+glycerol
+0.2
-0.5
-0.0
+0.3
+0.4
plant
Norland
+0.3
-0.4
+0.3
-0.1
+0.1
plant
Stem-Norland
-0.6
+0.5
+0.1
-0.0
+0.4
plant
Stem-Atlantic
+0.7
-0.1
-0.0
+0.1
-0.3
control
PDB
+0.2
-0.5
+0.4
+0.1
+0.2
carbon source
M9+glucose+arginine
+0.5
-0.0
-0.1
+0.3
-0.2
plant
Stem-Norland
-0.6
+0.7
+0.4
+0.4
-0.3
carbon source
M9+glycerol
+0.6
+0.1
+0.1
+0.1
-0.3
plant
Upstate
+1.1
-0.2
-0.2
-0.0
+0.1
control
LB
+0.8
-0.2
+0.0
+0.1
+0.1
control
PDB
-0.7
+0.6
+0.6
+0.1
+0.1
plant
Norland
+0.9
-0.4
+0.2
+0.0
+0.3
plant
Norland
+0.2
+0.6
+0.4
-0.2
-0.1
plant
Upstate
+0.9
+0.3
+0.2
-0.1
-0.4
plant
Stem-Atlantic
-0.3
+0.3
+0.2
+0.8
+0.1
carbon source
M9+glucose
+0.7
+0.1
+0.2
+0.3
-0.2
plant
Upstate
+1.2
-0.6
+0.3
-0.1
+0.3
plant
Norland
+0.5
+0.2
+0.0
+0.4
+0.1
control
LB
+0.6
+0.3
+0.1
+0.0
+0.2
plant
Stem-Norland
+0.3
+0.8
+0.5
+0.6
-0.2
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