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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS18600 and DDA3937_RS18605 are separated by 74 nucleotides
DDA3937_RS18605 and DDA3937_RS18610 are separated by 89 nucleotides
DDA3937_RS18610 and DDA3937_RS18615 are separated by 144 nucleotides
DDA3937_RS18615 and DDA3937_RS18620 overlap by 8 nucleotides
DDA3937_RS18600: DDA3937_RS18600 - FtsH protease activity modulator HflK, at 4,251,095 to 4,252,354
_RS18600
DDA3937_RS18605: DDA3937_RS18605 - GTPase HflX, at 4,252,429 to 4,253,709
_RS18605
DDA3937_RS18610: DDA3937_RS18610 - RNA chaperone Hfq, at 4,253,799 to 4,254,098
_RS18610
DDA3937_RS18615: DDA3937_RS18615 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 4,254,243 to 4,255,184
_RS18615
DDA3937_RS18620: DDA3937_RS18620 - DNA mismatch repair endonuclease MutL, at 4,255,177 to 4,257,117
_RS18620
Group
Condition
DDA3937
_RS18600
DDA3937
_RS18605
DDA3937
_RS18610
DDA3937
_RS18615
DDA3937
_RS18620
control
PDB
-2.3
-0.5
-2.7
-1.2
+0.2
stress
7.5mM_PTB
-1.7
+0.2
-1.8
-0.6
-0.2
control
PDB
-1.2
+0.1
-1.7
-1.3
+0.0
control
PDB
-2.4
+0.4
-2.1
-0.3
+0.3
plant
Stem-Atlantic
+0.0
-0.4
-0.7
-2.1
-0.0
stress
7.5mM_PTB
-0.7
+0.3
-2.1
-0.3
-0.3
plant
Stem-Norland
-1.0
-0.8
-1.0
+0.2
-0.1
control
LB
-0.6
+0.3
-1.4
-0.8
-0.0
plant
Stem-Atlantic
-0.1
+0.4
-1.0
-1.3
-0.4
plant
Stem-Norland
-1.3
-0.2
-1.3
+0.9
-0.2
control
PDB
+0.3
-0.5
-2.0
+1.2
+0.5
control
PDB
-0.3
-0.5
-2.0
+2.4
+0.5
plant
Upstate
-1.3
+0.1
+0.6
+1.3
-0.1
plant
Upstate
-1.2
+0.2
+1.1
+1.0
-0.3
plant
Upstate
-1.0
+0.3
+1.6
+0.6
-0.1
plant
Upstate
+0.0
-0.2
+1.2
+1.8
-0.1
plant
Norland
+0.2
+0.6
+1.0
+1.2
+0.0
plant
Norland
+0.2
+0.5
+0.9
+1.8
-0.1
plant
Upstate
+0.3
-0.0
+0.7
+2.7
-0.2
plant
Upstate
+0.5
-0.2
+1.5
+1.8
+0.1
plant
Atlantic
+1.6
+0.0
+1.8
+0.6
-0.2
plant
Norland
+0.4
+0.3
+2.0
+0.9
+0.3
plant
Norland
+1.1
+0.2
+2.4
+1.2
+0.0
plant
Atlantic
+0.4
+0.2
+2.4
+2.0
+0.2
carbon source
M9+glycerol
-0.9
+0.1
+6.4
-0.0
+0.1
carbon source
M9+glycerol
+0.5
+0.6
+5.8
+0.1
-0.2
carbon source
M9+glycerol
-0.5
+0.6
+6.6
+0.5
+0.0
carbon source
M9+glycerol
-0.2
+0.5
+6.4
+1.1
-0.2
carbon source
M9+glycerol
+0.2
-0.1
+7.5
+0.3
+0.1
carbon source
M9+glycerol
+0.3
-0.0
+7.8
+0.1
-0.1
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