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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS18430 and DDA3937_RS18435 are separated by 205 nucleotides
DDA3937_RS18435 and DDA3937_RS18440 overlap by 4 nucleotides
DDA3937_RS18440 and DDA3937_RS18445 are separated by 51 nucleotides
DDA3937_RS18445 and DDA3937_RS18450 are separated by 13 nucleotides
DDA3937_RS18430: DDA3937_RS18430 - protein CreA, at 4,211,700 to 4,212,173
_RS18430
DDA3937_RS18435: DDA3937_RS18435 - MDR efflux pump AcrAB transcriptional activator RobA, at 4,212,379 to 4,213,245
_RS18435
DDA3937_RS18440: DDA3937_RS18440 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB, at 4,213,242 to 4,213,892
_RS18440
DDA3937_RS18445: DDA3937_RS18445 - inosine/xanthosine triphosphatase, at 4,213,944 to 4,214,480
_RS18445
DDA3937_RS18450: DDA3937_RS18450 - trp operon repressor, at 4,214,494 to 4,214,835
_RS18450
Group
Condition
DDA3937
_RS18430
DDA3937
_RS18435
DDA3937
_RS18440
DDA3937
_RS18445
DDA3937
_RS18450
carbon source
M9+polygalacturonate
-1.4
-0.4
+0.1
-0.3
-0.8
carbon source
M9+glucose
-0.1
-0.2
-0.2
-1.0
-0.8
carbon source
M9+glycerol
-0.3
-0.1
-0.9
-0.7
-0.1
control
PDB
-0.1
+0.3
-0.2
-2.3
+0.1
carbon source
M9+glycerol
-0.1
-0.0
-1.1
-0.5
-0.4
plant
Stem-Atlantic
-0.9
-0.1
-0.2
-0.0
-0.7
carbon source
M9+polygalacturonate
-0.5
-0.5
-0.0
-0.5
-0.3
carbon source
M9+sucrose
-0.5
+0.2
-0.5
-0.4
-0.5
plant
Stem-Norland
-0.9
-0.2
+0.1
-0.0
-0.6
carbon source
M9+glycerol
-0.4
-0.1
-0.8
-0.0
-0.3
carbon source
M9+sucrose
-0.4
+0.2
-0.7
-0.6
+0.2
carbon source
M9+sucrose
+0.3
+0.2
-0.9
-0.2
-0.8
control
PDB
-1.1
+0.5
-0.2
-1.3
+0.7
plant
Atlantic
-0.9
-0.1
+0.2
-0.5
+0.0
plant
Stem-Norland
-1.0
+0.3
+0.4
+0.2
-1.2
plant
Stem-Atlantic
-1.2
+0.1
+0.4
-0.0
-0.6
plant
Upstate
-1.1
-0.6
+0.1
-0.0
+0.4
plant
Stem-Norland
-0.8
-0.1
+0.2
+0.2
-0.6
control
LB
-0.2
-0.4
+0.4
-0.2
-0.3
plant
Atlantic
-0.2
-0.3
-0.0
-0.6
+0.7
plant
Stem-Atlantic
-1.0
-0.0
+0.4
+0.4
-0.2
plant
Norland
-0.6
-0.2
+0.2
+0.5
-0.2
control
PDB
+0.2
+0.5
-0.1
-1.1
+0.5
control
PDB
-0.7
+0.4
+0.3
-0.0
+0.3
plant
Stem-Atlantic
-0.6
-0.0
+0.5
+0.8
-0.2
control
PDB
+0.6
+0.3
+0.2
-0.7
+0.0
plant
Norland
+0.0
-0.4
+0.4
+0.4
+0.4
control
PDB
+0.4
+0.3
-0.0
-0.5
+0.6
plant
Norland
+0.2
-0.4
+0.4
+0.5
+0.3
plant
Norland
+2.2
-0.2
-0.1
+0.3
-0.3
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