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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS18420 and DDA3937_RS18425 are separated by 562 nucleotides
DDA3937_RS18425 and DDA3937_RS18430 are separated by 97 nucleotides
DDA3937_RS18430 and DDA3937_RS18435 are separated by 205 nucleotides
DDA3937_RS18435 and DDA3937_RS18440 overlap by 4 nucleotides
DDA3937_RS18420: DDA3937_RS18420 - tRNA/rRNA methyltransferase, at 4,209,622 to 4,210,323
_RS18420
DDA3937_RS18425: DDA3937_RS18425 - two-component system response regulator ArcA, at 4,210,886 to 4,211,602
_RS18425
DDA3937_RS18430: DDA3937_RS18430 - protein CreA, at 4,211,700 to 4,212,173
_RS18430
DDA3937_RS18435: DDA3937_RS18435 - MDR efflux pump AcrAB transcriptional activator RobA, at 4,212,379 to 4,213,245
_RS18435
DDA3937_RS18440: DDA3937_RS18440 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB, at 4,213,242 to 4,213,892
_RS18440
Group
Condition
DDA3937
_RS18420
DDA3937
_RS18425
DDA3937
_RS18430
DDA3937
_RS18435
DDA3937
_RS18440
plant
Upstate
-0.3
-0.9
-1.1
-0.6
+0.1
carbon source
M9+polygalacturonate
+0.0
-0.3
-1.4
-0.4
+0.1
carbon source
M9+glycerol
+0.1
-0.8
-0.2
-0.2
-0.8
plant
Upstate
-0.3
-1.0
-0.5
-0.3
+0.2
carbon source
M9+glycerol
+0.3
-0.7
-0.3
-0.1
-0.9
carbon source
M9+glycerol
+0.1
-0.6
-0.4
-0.1
-0.8
carbon source
M9+glycerol
+0.1
-0.6
-0.1
-0.0
-1.1
plant
Atlantic
+0.1
-0.9
-0.9
-0.1
+0.2
plant
Atlantic
-0.4
-1.2
-0.0
-0.1
+0.1
plant
Upstate
-0.3
-1.1
+0.1
-0.3
+0.0
plant
Stem-Atlantic
+0.1
-0.3
-0.9
-0.1
-0.2
carbon source
M9+glycerol
-0.3
-0.9
+0.1
-0.2
-0.1
plant
Upstate
-0.1
-1.3
+0.0
+0.1
-0.0
control
PDB
-0.2
-0.3
-1.1
+0.5
-0.2
plant
Norland
+0.0
-0.7
-0.6
-0.2
+0.2
control
PDB
-0.1
-1.1
-0.1
+0.3
-0.2
plant
Stem-Atlantic
+0.0
-0.4
-1.2
+0.1
+0.4
plant
Stem-Norland
+0.1
-0.5
-0.8
-0.1
+0.2
carbon source
M9+sucrose
+0.1
-0.2
-0.5
+0.2
-0.5
plant
Stem-Norland
+0.3
-0.3
-0.9
-0.2
+0.1
plant
Norland
-0.3
-0.8
+0.1
-0.1
+0.3
carbon source
M9+sucrose
-0.0
-0.4
+0.3
+0.2
-0.9
plant
Stem-Norland
+0.4
-0.6
-0.5
-0.2
+0.1
plant
Upstate
+0.1
-1.0
+0.3
-0.3
+0.2
plant
Stem-Atlantic
-0.1
-0.1
-1.0
-0.0
+0.4
control
LB
-0.0
-0.4
-0.2
-0.4
+0.4
control
PDB
-0.0
-0.6
-0.7
+0.4
+0.3
plant
Norland
-0.0
-0.6
+0.0
-0.4
+0.4
plant
Stem-Norland
+0.1
-0.1
-1.0
+0.3
+0.4
plant
Norland
+0.1
-1.1
+2.2
-0.2
-0.1
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