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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS18405 and DDA3937_RS18410 are separated by 3 nucleotides
DDA3937_RS18410 and DDA3937_RS18415 are separated by 2 nucleotides
DDA3937_RS18415 and DDA3937_RS18420 are separated by 434 nucleotides
DDA3937_RS18420 and DDA3937_RS18425 are separated by 562 nucleotides
DDA3937_RS18405: DDA3937_RS18405 - threonine synthase, at 4,204,506 to 4,205,795
_RS18405
DDA3937_RS18410: DDA3937_RS18410 - homoserine kinase, at 4,205,799 to 4,206,728
_RS18410
DDA3937_RS18415: DDA3937_RS18415 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 4,206,731 to 4,209,187
_RS18415
DDA3937_RS18420: DDA3937_RS18420 - tRNA/rRNA methyltransferase, at 4,209,622 to 4,210,323
_RS18420
DDA3937_RS18425: DDA3937_RS18425 - two-component system response regulator ArcA, at 4,210,886 to 4,211,602
_RS18425
Group
Condition
DDA3937
_RS18405
DDA3937
_RS18410
DDA3937
_RS18415
DDA3937
_RS18420
DDA3937
_RS18425
carbon source
M9+polygalacturonate
-3.9
-4.5
-4.5
+0.0
-0.3
carbon source
M9+sucrose
-4.1
-3.7
-4.8
-0.0
-0.4
carbon source
M9+polygalacturonate
-3.8
-4.1
-4.5
+0.0
-0.4
carbon source
M9+glucose
-3.7
-4.6
-4.3
-0.4
+0.0
carbon source
M9+starch
-3.7
-4.2
-4.6
+0.0
-0.1
carbon source
M9+starch
-3.7
-4.2
-4.2
+0.0
-0.3
plant
Stem-Atlantic
-4.3
-4.4
-3.2
-0.1
-0.1
carbon source
M9+starch
-3.8
-3.3
-4.6
+0.1
-0.5
carbon source
M9+sucrose
-3.9
-3.7
-4.2
+0.0
-0.2
carbon source
M9+polygalacturonate
-3.6
-3.5
-4.4
+0.0
-0.3
carbon source
M9+glucose
-3.7
-3.7
-4.0
-0.0
-0.3
carbon source
M9+sucrose
-3.9
-3.5
-3.9
+0.1
-0.2
carbon source
M9+glucose
-3.3
-3.3
-3.8
-0.4
-0.1
plant
Stem-Norland
-4.1
-3.8
-2.8
+0.1
-0.1
carbon source
M9+glucose+arginine
-3.2
-3.1
-3.7
-0.1
-0.1
carbon source
M9+glycerol
-3.5
-2.6
-3.2
+0.0
-0.8
carbon source
M9+glucose+arginine
-3.5
-2.4
-3.1
-0.2
-0.1
plant
Stem-Atlantic
-3.7
-3.5
-1.7
+0.0
-0.4
carbon source
M9+glucose+arginine
-3.3
-3.0
-2.6
-0.2
+0.1
plant
Stem-Atlantic
-3.6
-2.8
-2.3
+0.1
-0.3
carbon source
M9+glycerol
-3.5
-1.9
-2.9
+0.3
-0.7
carbon source
M9+glycerol
-2.2
-2.8
-2.4
-0.3
-0.9
carbon source
M9+glycerol
-3.5
-1.5
-2.7
+0.1
-0.6
carbon source
M9+glycerol
-2.4
-2.6
-2.1
+0.1
-0.8
carbon source
M9+glycerol
-3.1
-1.4
-2.7
+0.1
-0.6
plant
Stem-Norland
-3.9
-2.1
-1.5
+0.3
-0.3
plant
Atlantic
-2.8
-2.3
-1.6
-0.1
-0.3
plant
Stem-Atlantic
-3.4
-2.3
-1.4
+0.1
+0.2
plant
Atlantic
-2.7
-1.8
-1.7
+0.3
-0.4
plant
Atlantic
-2.6
-2.1
-1.3
+0.3
-0.4
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