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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS18305 and DDA3937_RS18310 are separated by 92 nucleotides
DDA3937_RS18310 and DDA3937_RS18315 are separated by 453 nucleotides
DDA3937_RS18315 and DDA3937_RS18320 are separated by 240 nucleotides
DDA3937_RS18320 and DDA3937_RS18325 are separated by 72 nucleotides
DDA3937_RS18305: DDA3937_RS18305 - carbamoyl-phosphate synthase large subunit, at 4,178,737 to 4,181,961
_RS18305
DDA3937_RS18310: DDA3937_RS18310 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 4,182,054 to 4,183,199
_RS18310
DDA3937_RS18315: DDA3937_RS18315 - 4-hydroxy-tetrahydrodipicolinate reductase, at 4,183,653 to 4,184,474
_RS18315
DDA3937_RS18320: DDA3937_RS18320 - ribonucleoside hydrolase RihC, at 4,184,715 to 4,185,632
_RS18320
DDA3937_RS18325: DDA3937_RS18325 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 4,185,705 to 4,186,655
_RS18325
Group
Condition
DDA3937
_RS18305
DDA3937
_RS18310
DDA3937
_RS18315
DDA3937
_RS18320
DDA3937
_RS18325
carbon source
M9+polygalacturonate
-4.3
-3.6
N.D.
+0.1
N.D.
carbon source
M9+sucrose
-4.5
-3.2
N.D.
+0.1
N.D.
carbon source
M9+polygalacturonate
-4.1
-3.6
N.D.
+0.1
N.D.
carbon source
M9+glucose
-4.3
-3.4
N.D.
+0.1
N.D.
carbon source
M9+polygalacturonate
-4.2
-3.2
N.D.
-0.0
N.D.
carbon source
M9+glycerol
-3.7
-3.4
N.D.
-0.2
N.D.
carbon source
M9+glycerol
-3.6
-3.8
N.D.
-0.0
N.D.
carbon source
M9+sucrose
-4.1
-3.4
N.D.
+0.2
N.D.
carbon source
M9+sucrose
-4.3
-3.2
N.D.
+0.3
N.D.
carbon source
M9+starch
-3.8
-3.1
N.D.
-0.2
N.D.
carbon source
M9+glycerol
-3.4
-3.5
N.D.
-0.1
N.D.
carbon source
M9+glucose
-3.8
-3.0
N.D.
-0.0
N.D.
carbon source
M9+starch
-3.9
-3.1
N.D.
+0.1
N.D.
carbon source
M9+starch
-3.4
-3.0
N.D.
-0.1
N.D.
plant
Stem-Norland
-3.5
-2.9
N.D.
-0.2
N.D.
carbon source
M9+glucose
-3.2
-3.5
N.D.
+0.1
N.D.
plant
Stem-Atlantic
-3.1
-3.0
N.D.
+0.1
N.D.
carbon source
M9+glycerol
-3.1
-3.0
N.D.
+0.2
N.D.
carbon source
M9+glucose+arginine
-2.8
-2.7
N.D.
+0.0
N.D.
plant
Norland
-3.4
-2.4
N.D.
+0.4
N.D.
plant
Stem-Atlantic
-3.2
-2.3
N.D.
+0.2
N.D.
plant
Stem-Norland
-2.9
-2.6
N.D.
+0.2
N.D.
plant
Stem-Atlantic
-3.2
-2.2
N.D.
+0.2
N.D.
carbon source
M9+glycerol
-2.7
-2.3
N.D.
-0.2
N.D.
carbon source
M9+glycerol
-2.7
-2.5
N.D.
+0.1
N.D.
plant
Stem-Atlantic
-2.7
-2.0
N.D.
-0.3
N.D.
plant
Stem-Norland
-2.5
-2.5
N.D.
+0.0
N.D.
carbon source
M9+glucose+arginine
-2.5
-2.5
N.D.
+0.1
N.D.
carbon source
M9+glucose+arginine
-2.6
-2.4
N.D.
+0.2
N.D.
plant
Atlantic
-2.6
-2.0
N.D.
+0.3
N.D.
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