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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS23340 and DDA3937_RS18170 are separated by 113 nucleotides
DDA3937_RS18170 and DDA3937_RS18175 are separated by 3 nucleotides
DDA3937_RS18175 and DDA3937_RS18180 are separated by 45 nucleotides
DDA3937_RS18180 and DDA3937_RS18185 are separated by 190 nucleotides
DDA3937_RS23340: DDA3937_RS23340 - ilvB operon leader peptide IvbL, at 4,149,035 to 4,149,148
_RS23340
DDA3937_RS18170: DDA3937_RS18170 - acetolactate synthase large subunit, at 4,149,262 to 4,150,926
_RS18170
DDA3937_RS18175: DDA3937_RS18175 - acetolactate synthase small subunit, at 4,150,930 to 4,151,223
_RS18175
DDA3937_RS18180: DDA3937_RS18180 - DedA family protein, at 4,151,269 to 4,152,036
_RS18180
DDA3937_RS18185: DDA3937_RS18185 - DUF3380 domain-containing protein, at 4,152,227 to 4,153,078
_RS18185
Group
Condition
DDA3937
_RS23340
DDA3937
_RS18170
DDA3937
_RS18175
DDA3937
_RS18180
DDA3937
_RS18185
carbon source
M9+glycerol
-1.4
-0.9
-0.6
-0.3
-0.1
carbon source
M9+glycerol
-1.0
-1.8
-0.5
+0.0
+0.1
plant
Stem-Norland
-2.1
+0.0
+0.1
-0.7
-0.0
carbon source
M9+glycerol
-0.7
-1.6
-0.3
-0.0
+0.0
carbon source
M9+glycerol
-0.9
-0.9
-0.6
-0.1
-0.1
carbon source
M9+glycerol
-0.7
-1.5
-0.5
+0.1
+0.0
control
PDB
-2.6
+0.2
-0.1
+0.2
-0.2
control
PDB
-2.3
-0.1
-0.1
+1.0
-0.5
carbon source
M9+glycerol
+0.1
-1.2
-0.4
-0.2
-0.3
plant
Stem-Atlantic
-1.1
-0.0
-0.4
-0.2
-0.2
carbon source
M9+starch
-1.0
-0.0
-0.2
-0.1
-0.3
plant
Stem-Norland
-1.4
+0.1
-0.2
-0.1
+0.0
plant
Upstate
+0.5
-0.1
-0.4
-0.9
-0.7
stress
1.88mM_PTB
-0.8
-0.1
+0.1
-0.6
+0.2
plant
Stem-Atlantic
-1.0
-0.3
-0.2
+0.3
+0.1
control
PDB
-1.3
+0.2
+0.1
+0.7
-0.5
plant
Stem-Atlantic
+0.6
-0.0
-0.3
-0.4
-0.4
plant
Stem-Norland
-1.3
+0.5
+0.1
+0.0
+0.1
carbon source
M9+glucose+arginine
-0.7
+0.3
-0.1
+0.3
-0.3
plant
Atlantic
+0.7
-0.0
-0.3
-0.9
+0.1
plant
Stem-Atlantic
+0.6
+0.2
-0.0
-0.6
-0.3
control
PDB
+0.4
+0.3
+0.3
-0.4
-0.2
carbon source
M9+glucose+arginine
-0.5
+0.3
-0.1
+1.1
-0.3
plant
Stem-Norland
+0.3
+0.5
+0.0
+0.6
-0.3
carbon source
M9+glucose
-0.0
+0.6
-0.2
+1.1
-0.3
plant
Upstate
-0.1
-0.2
+0.3
+1.5
-0.3
plant
Upstate
+0.4
-0.1
+0.1
+1.1
-0.2
plant
Stem-Atlantic
+0.3
+0.5
+0.5
+0.2
-0.1
carbon source
M9+glucose+arginine
+0.3
+0.5
-0.2
+1.5
+0.0
plant
Norland
+0.2
+0.6
-0.1
+1.4
+0.3
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