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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS17530 and DDA3937_RS17535 are separated by 370 nucleotides
DDA3937_RS17535 and DDA3937_RS17540 are separated by 250 nucleotides
DDA3937_RS17540 and DDA3937_RS17545 are separated by 48 nucleotides
DDA3937_RS17545 and DDA3937_RS17550 are separated by 1366 nucleotides
DDA3937_RS17530: DDA3937_RS17530 - amino acid permease, at 3,985,943 to 3,987,316
_RS17530
DDA3937_RS17535: DDA3937_RS17535 - Lrp/AsnC family transcriptional regulator, at 3,987,687 to 3,988,163
_RS17535
DDA3937_RS17540: DDA3937_RS17540 - YitT family protein, at 3,988,414 to 3,989,028
_RS17540
DDA3937_RS17545: DDA3937_RS17545 - aspartate/tyrosine/aromatic aminotransferase, at 3,989,077 to 3,990,270
_RS17545
DDA3937_RS17550: DDA3937_RS17550 - type I-F CRISPR-associated endoribonuclease Cas6/Csy4, at 3,991,637 to 3,992,191
_RS17550
Group
Condition
DDA3937
_RS17530
DDA3937
_RS17535
DDA3937
_RS17540
DDA3937
_RS17545
DDA3937
_RS17550
control
PDB
-0.3
-0.1
-0.5
-1.0
+0.1
control
PDB
+0.1
+0.2
-0.2
-2.0
+0.0
control
PDB
-0.3
-0.3
-0.3
-0.8
-0.2
control
PDB
+0.0
-0.6
-0.4
-0.8
+0.2
carbon source
M9+glucose+arginine
-0.1
+0.2
+0.1
-1.6
+0.0
carbon source
M9+glucose+arginine
+0.2
-0.2
-0.2
-1.3
+0.2
carbon source
M9+glucose
+0.0
-0.5
-0.2
-0.8
+0.2
control
LB
+0.1
-0.0
-0.0
-1.2
-0.1
plant
Stem-Atlantic
-0.1
+0.1
-0.1
-0.9
-0.2
control
LB
+0.2
-0.0
-0.1
-1.2
+0.0
plant
Atlantic
-0.0
-0.2
-0.2
-1.2
+0.7
control
LB
+0.1
+0.1
+0.1
-1.1
-0.1
plant
Stem-Atlantic
+0.1
-0.1
-0.2
-0.9
+0.2
carbon source
M9+polygalacturonate
-0.0
-0.3
-0.0
-0.8
+0.3
plant
Atlantic
-0.1
-0.1
+0.0
-0.9
+0.1
carbon source
M9+sucrose
+0.1
+0.1
-0.3
-0.7
+0.1
plant
Norland
+0.1
-0.0
-0.1
-1.0
+0.2
plant
Stem-Norland
-0.0
-0.6
+0.6
-0.5
-0.0
plant
Stem-Atlantic
-0.1
-0.3
+0.3
-0.7
+0.2
carbon source
M9+glucose
+0.1
-0.6
-0.0
-0.2
+0.3
plant
Stem-Norland
+0.0
+0.2
+0.4
-0.7
-0.4
carbon source
M9+glycerol
+0.2
-0.6
+0.2
-0.3
+0.1
plant
Stem-Norland
-0.0
+0.2
+0.3
-0.8
-0.0
carbon source
M9+glucose
-0.0
-0.2
-0.1
-0.5
+0.4
plant
Stem-Atlantic
-0.1
+0.1
+0.1
-0.9
+0.7
plant
Norland
+0.1
+0.2
+0.3
-0.6
+0.0
plant
Upstate
-0.0
+0.3
-0.3
-0.1
+0.4
plant
Upstate
+0.1
-0.2
+0.0
+0.9
+0.1
plant
Atlantic
+0.2
+0.3
-0.0
+1.0
-0.0
plant
Norland
+0.4
+1.0
+0.0
+0.3
-0.1
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DDA3937_RS17540
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