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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS17495 and DDA3937_RS17500 are separated by 355 nucleotides
DDA3937_RS17500 and DDA3937_RS17505 are separated by 122 nucleotides
DDA3937_RS17505 and DDA3937_RS17510 are separated by 35 nucleotides
DDA3937_RS17510 and DDA3937_RS17515 are separated by 142 nucleotides
DDA3937_RS17495: DDA3937_RS17495 - cytochrome P450, at 3,978,153 to 3,979,559
_RS17495
DDA3937_RS17500: DDA3937_RS17500 - quinone oxidoreductase, at 3,979,915 to 3,980,904
_RS17500
DDA3937_RS17505: DDA3937_RS17505 - replicative DNA helicase, at 3,981,027 to 3,982,430
_RS17505
DDA3937_RS17510: DDA3937_RS17510 - alanine racemase, at 3,982,466 to 3,983,542
_RS17510
DDA3937_RS17515: DDA3937_RS17515 - DUF1471 domain-containing protein, at 3,983,685 to 3,983,933
_RS17515
Group
Condition
DDA3937
_RS17495
DDA3937
_RS17500
DDA3937
_RS17505
DDA3937
_RS17510
DDA3937
_RS17515
control
PDB
-0.1
+0.2
N.D.
N.D.
-2.7
plant
Stem-Atlantic
+0.2
-0.3
N.D.
N.D.
-2.3
carbon source
M9+starch
-0.3
-0.0
N.D.
N.D.
-1.9
plant
Atlantic
-0.0
+0.2
N.D.
N.D.
-1.6
control
LB
+0.0
+0.0
N.D.
N.D.
-1.5
plant
Atlantic
+0.1
+0.0
N.D.
N.D.
-1.4
carbon source
M9+glycerol
-0.2
-0.1
N.D.
N.D.
-1.0
plant
Stem-Atlantic
-0.3
-0.1
N.D.
N.D.
-0.7
carbon source
M9+glucose
-0.1
+0.2
N.D.
N.D.
-1.2
plant
Stem-Norland
-0.1
+0.0
N.D.
N.D.
-0.9
carbon source
M9+glucose+arginine
-0.0
+0.3
N.D.
N.D.
-1.2
plant
Norland
-0.0
+0.1
N.D.
N.D.
-1.0
control
PDB
-0.2
+0.1
N.D.
N.D.
-0.8
carbon source
M9+glucose+arginine
-0.0
-0.0
N.D.
N.D.
-0.8
carbon source
M9+glucose+arginine
-0.0
+0.1
N.D.
N.D.
-0.9
carbon source
M9+polygalacturonate
-0.1
-0.0
N.D.
N.D.
-0.7
control
LB
-0.0
-0.0
N.D.
N.D.
-0.7
carbon source
M9+sucrose
+0.0
+0.1
N.D.
N.D.
-0.9
stress
3.75mM_PTB
+0.0
+0.0
N.D.
N.D.
-0.8
carbon source
M9+sucrose
+0.0
+0.1
N.D.
N.D.
-0.6
carbon source
M9+glucose
+0.1
+0.3
N.D.
N.D.
-0.6
plant
Stem-Atlantic
+0.4
-0.3
N.D.
N.D.
-0.4
plant
Stem-Norland
-0.2
-0.3
N.D.
N.D.
+0.5
plant
Atlantic
-0.3
-0.0
N.D.
N.D.
+0.5
plant
Stem-Norland
+0.4
+0.2
N.D.
N.D.
-0.3
control
PDB
-0.2
+0.0
N.D.
N.D.
+0.9
carbon source
M9+glycerol
-0.0
+0.1
N.D.
N.D.
+0.7
plant
Stem-Atlantic
+0.0
-0.3
N.D.
N.D.
+1.0
plant
Upstate
+0.0
+0.1
N.D.
N.D.
+0.6
plant
Atlantic
+0.3
+0.1
N.D.
N.D.
+0.6
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