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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS17250 and DDA3937_RS17255 are separated by 103 nucleotides
DDA3937_RS17255 and DDA3937_RS17260 are separated by 76 nucleotides
DDA3937_RS17260 and DDA3937_RS17265 are separated by 40 nucleotides
DDA3937_RS17265 and DDA3937_RS17270 are separated by 360 nucleotides
DDA3937_RS17250: DDA3937_RS17250 - hypothetical protein, at 3,927,733 to 3,928,008
_RS17250
DDA3937_RS17255: DDA3937_RS17255 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 3,928,112 to 3,928,846
_RS17255
DDA3937_RS17260: DDA3937_RS17260 - ribonuclease R, at 3,928,923 to 3,931,412
_RS17260
DDA3937_RS17265: DDA3937_RS17265 - nitric oxide-sensing transcriptional repressor NsrR, at 3,931,453 to 3,931,878
_RS17265
DDA3937_RS17270: DDA3937_RS17270 - Tar ligand binding domain-containing protein, at 3,932,239 to 3,933,825
_RS17270
Group
Condition
DDA3937
_RS17250
DDA3937
_RS17255
DDA3937
_RS17260
DDA3937
_RS17265
DDA3937
_RS17270
plant
Stem-Norland
-2.8
-0.7
-0.4
-1.2
-0.0
plant
Stem-Norland
-2.9
-0.2
-0.1
-0.5
-0.1
carbon source
M9+glucose
-0.7
-0.8
-0.7
-1.8
+0.1
plant
Upstate
-2.3
-0.1
-0.6
-0.3
-0.0
plant
Upstate
-2.4
+0.4
-0.1
-1.0
-0.2
plant
Upstate
-2.0
-0.2
-0.2
-0.7
+0.3
plant
Upstate
-1.5
-0.3
-0.2
-0.8
-0.1
carbon source
M9+glucose+arginine
-0.1
-0.4
-1.0
-1.4
+0.0
control
PDB
-0.9
-1.0
-0.3
-0.2
-0.3
plant
Stem-Atlantic
-1.9
-0.1
-0.1
-0.3
-0.1
plant
Stem-Norland
-2.4
-0.3
+0.3
-0.1
-0.2
control
PDB
-1.9
-1.2
-0.0
+0.6
-0.1
control
PDB
-2.1
-0.8
+0.1
+0.4
-0.1
plant
Norland
-1.1
+0.0
-0.3
-0.6
-0.3
carbon source
M9+glucose+arginine
+0.4
-0.2
-1.1
-1.4
+0.1
plant
Atlantic
-0.9
-0.6
-0.1
-0.9
+0.5
plant
Norland
-1.4
-0.3
-0.1
-0.1
-0.0
plant
Stem-Atlantic
-0.7
+0.1
-0.3
-0.9
-0.1
carbon source
M9+sucrose
-1.4
+0.4
+0.0
-1.1
+0.2
carbon source
M9+glucose+arginine
+1.0
-0.8
-0.9
-1.2
+0.1
plant
Norland
-1.2
+0.3
+0.1
-1.0
-0.0
control
PDB
-0.5
-1.0
-0.2
+0.4
-0.5
plant
Stem-Atlantic
-2.4
+0.1
+0.1
+0.6
-0.0
carbon source
M9+starch
-1.4
-0.4
-0.0
-0.1
+0.3
stress
3.75mM_PTB
+0.4
-0.7
-0.8
-0.3
-0.1
carbon source
M9+glucose
+1.0
-0.3
-0.5
-1.7
+0.1
plant
Atlantic
+0.7
+0.1
-0.1
-1.5
+0.3
plant
Atlantic
-0.7
+0.7
-0.3
-0.2
+0.3
plant
Norland
-0.8
-0.4
-0.0
+1.7
-0.1
plant
Stem-Atlantic
+1.0
+0.7
-0.0
+1.0
-0.3
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