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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS17230 and DDA3937_RS17235 are separated by 221 nucleotides
DDA3937_RS17235 and DDA3937_RS17240 are separated by 227 nucleotides
DDA3937_RS17240 and DDA3937_RS17245 are separated by 138 nucleotides
DDA3937_RS17245 and DDA3937_RS17250 are separated by 10 nucleotides
DDA3937_RS17230: DDA3937_RS17230 - 30S ribosomal protein S6, at 3,923,648 to 3,924,040
_RS17230
DDA3937_RS17235: DDA3937_RS17235 - esterase, at 3,924,262 to 3,925,011
_RS17235
DDA3937_RS17240: DDA3937_RS17240 - methyl-accepting chemotaxis protein, at 3,925,239 to 3,927,179
_RS17240
DDA3937_RS17245: DDA3937_RS17245 - biofilm peroxide resistance protein BsmA, at 3,927,318 to 3,927,722
_RS17245
DDA3937_RS17250: DDA3937_RS17250 - hypothetical protein, at 3,927,733 to 3,928,008
_RS17250
Group
Condition
DDA3937
_RS17230
DDA3937
_RS17235
DDA3937
_RS17240
DDA3937
_RS17245
DDA3937
_RS17250
plant
Stem-Norland
N.D.
+0.2
+0.2
-0.4
-2.9
plant
Stem-Norland
N.D.
-0.1
-0.0
+0.3
-2.8
plant
Stem-Norland
N.D.
-0.1
+0.1
-0.1
-2.4
plant
Stem-Atlantic
N.D.
-0.3
+0.1
+0.1
-2.4
plant
Upstate
N.D.
-0.1
+0.2
-0.3
-2.3
control
PDB
N.D.
-0.4
-0.0
-0.1
-1.9
control
PDB
N.D.
-0.2
-0.0
-0.1
-2.1
plant
Upstate
N.D.
+0.0
+0.2
-0.1
-2.0
plant
Upstate
N.D.
+0.1
+0.1
+0.3
-2.4
carbon source
M9+glucose
N.D.
-0.8
-0.2
-0.0
-0.7
carbon source
M9+sucrose
N.D.
-0.2
+0.0
-0.1
-1.4
plant
Stem-Atlantic
N.D.
+0.1
+0.3
+0.1
-1.9
plant
Atlantic
N.D.
-0.4
+0.1
-0.1
-0.9
plant
Norland
N.D.
+0.0
+0.1
-0.1
-1.4
carbon source
M9+starch
N.D.
+0.1
-0.0
-0.0
-1.4
plant
Upstate
N.D.
-0.0
+0.2
+0.0
-1.5
plant
Norland
N.D.
-0.0
-0.0
+0.1
-1.2
plant
Atlantic
N.D.
-0.2
+0.2
-0.0
-0.9
control
PDB
N.D.
-0.2
+0.1
+0.0
-0.9
plant
Stem-Atlantic
N.D.
-0.2
+0.1
-0.1
-0.7
plant
Norland
N.D.
+0.3
-0.0
+0.3
-1.1
carbon source
M9+glucose+arginine
N.D.
-0.9
+0.1
-0.1
+0.4
plant
Norland
N.D.
+0.4
+0.1
+0.3
-1.1
plant
Norland
N.D.
+0.5
+0.1
+0.1
-0.8
carbon source
M9+glucose+arginine
N.D.
-1.0
-0.0
+0.1
+1.0
carbon source
M9+glucose
N.D.
-0.4
+0.1
-0.0
+1.0
plant
Stem-Atlantic
N.D.
-0.1
-0.0
-0.0
+1.0
carbon source
M9+glycerol
N.D.
+0.1
+0.0
-0.1
+0.9
stress
7.5mM_PTB
N.D.
-0.0
+0.1
+0.1
+1.0
plant
Atlantic
N.D.
-0.0
+0.4
+0.1
+0.7
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