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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS17160 and DDA3937_RS17165 are separated by 383 nucleotides
DDA3937_RS17165 and DDA3937_RS17170 are separated by 295 nucleotides
DDA3937_RS17170 and DDA3937_RS17175 are separated by 96 nucleotides
DDA3937_RS17175 and DDA3937_RS23440 are separated by 275 nucleotides
DDA3937_RS17160: DDA3937_RS17160 - outer membrane protein assembly factor, at 3,910,705 to 3,912,441
_RS17160
DDA3937_RS17165: DDA3937_RS17165 - peptide-methionine (S)-S-oxide reductase MsrA, at 3,912,825 to 3,913,463
_RS17165
DDA3937_RS17170: DDA3937_RS17170 - HlyC/CorC family transporter, at 3,913,759 to 3,915,075
_RS17170
DDA3937_RS17175: DDA3937_RS17175 - DUF1107 domain-containing protein, at 3,915,172 to 3,915,378
_RS17175
DDA3937_RS23440: DDA3937_RS23440 - hypothetical protein, at 3,915,654 to 3,915,800
_RS23440
Group
Condition
DDA3937
_RS17160
DDA3937
_RS17165
DDA3937
_RS17170
DDA3937
_RS17175
DDA3937
_RS23440
control
PDB
-2.3
+0.3
-0.5
-0.7
-1.3
control
PDB
-2.5
+0.1
-0.4
-1.0
-0.5
plant
Atlantic
-1.8
+0.2
-0.6
+0.0
-0.5
plant
Upstate
-2.1
+0.0
-0.7
+0.0
+0.1
plant
Upstate
-1.8
-0.2
-0.4
+0.2
-0.2
control
PDB
-1.6
+0.1
+0.1
-0.8
-0.4
plant
Upstate
-1.8
+0.0
-0.5
+0.1
-0.3
plant
Upstate
-1.6
+0.0
-0.6
-0.1
-0.1
control
PDB
-2.3
+0.0
-0.2
-0.5
+0.6
control
PDB
-1.3
+0.2
-0.8
-0.7
+0.2
plant
Atlantic
-1.4
-0.2
-0.0
+0.0
-0.8
control
PDB
-1.4
-0.2
-0.6
-0.5
+0.5
control
LB
-1.5
-0.0
-0.1
-0.2
-0.4
plant
Norland
-1.4
+0.1
-0.8
+0.1
-0.0
control
LB
-1.5
+0.0
+0.1
-0.2
-0.5
plant
Upstate
-1.8
+0.3
-0.1
-0.1
-0.3
plant
Upstate
-1.8
+0.1
-0.0
+0.0
-0.2
plant
Atlantic
-1.7
+0.1
-0.6
+0.3
-0.0
plant
Atlantic
-1.1
-0.0
-0.5
-0.1
-0.1
plant
Norland
-1.0
+0.3
-0.6
+0.0
-0.3
plant
Norland
-1.2
+0.1
+0.3
+0.0
-0.6
plant
Atlantic
-1.2
+0.0
-0.6
+0.4
+0.1
plant
Stem-Atlantic
-0.3
+0.2
-0.1
+0.3
-1.3
carbon source
M9+glucose
+0.3
-0.3
-0.2
+0.3
-1.2
carbon source
M9+glucose+arginine
+0.3
-0.3
-1.1
+0.3
-0.3
plant
Norland
-0.9
+0.4
-0.0
+0.2
-0.5
plant
Atlantic
-1.7
+0.1
-0.0
+0.1
+1.0
plant
Norland
-0.9
+0.1
+0.7
+0.0
-0.4
carbon source
M9+glucose+arginine
+0.6
-0.4
-0.8
+0.5
+0.2
control
LB
+0.3
-0.3
+0.0
+0.8
-0.3
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