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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS17045 and DDA3937_RS17050 are separated by 15 nucleotides
DDA3937_RS17050 and DDA3937_RS17055 are separated by 20 nucleotides
DDA3937_RS17055 and DDA3937_RS17065 are separated by 896 nucleotides
DDA3937_RS17065 and DDA3937_RS17070 are separated by 588 nucleotides
DDA3937_RS17045: DDA3937_RS17045 - glucarate dehydratase, at 3,880,755 to 3,882,095
_RS17045
DDA3937_RS17050: DDA3937_RS17050 - glucarate dehydratase, at 3,882,111 to 3,883,472
_RS17050
DDA3937_RS17055: DDA3937_RS17055 - MFS transporter, at 3,883,493 to 3,884,845
_RS17055
DDA3937_RS17065: DDA3937_RS17065 - galactarate dehydratase, at 3,885,742 to 3,887,331
_RS17065
DDA3937_RS17070: DDA3937_RS17070 - PAS domain-containing protein, at 3,887,920 to 3,889,455
_RS17070
Group
Condition
DDA3937
_RS17045
DDA3937
_RS17050
DDA3937
_RS17055
DDA3937
_RS17065
DDA3937
_RS17070
plant
Stem-Norland
-0.6
-0.3
-0.5
-0.2
-0.3
control
PDB
-0.9
-0.3
-0.1
-0.2
-0.0
plant
Stem-Atlantic
-0.3
-0.6
-0.1
-0.1
-0.1
plant
Stem-Norland
-0.6
-0.3
+0.1
-0.2
-0.1
plant
Upstate
-0.5
-0.2
+0.0
-0.1
-0.1
plant
Norland
-0.2
-0.4
+0.0
-0.0
-0.2
plant
Stem-Norland
-0.3
-0.2
+0.0
-0.4
+0.1
plant
Atlantic
-0.7
+0.4
-0.0
-0.3
+0.0
plant
Stem-Atlantic
-0.4
-0.7
-0.0
+0.5
+0.1
plant
Stem-Norland
-0.6
-0.7
-0.1
+0.6
+0.3
plant
Stem-Atlantic
-0.8
+0.0
-0.3
+0.5
+0.1
plant
Stem-Atlantic
-0.1
-0.6
-0.0
+0.5
-0.0
plant
Atlantic
-0.3
+0.2
-0.1
-0.0
-0.1
carbon source
M9+starch
-0.4
+0.1
-0.1
+0.1
+0.1
plant
Norland
-0.5
+0.0
-0.1
+0.2
+0.1
plant
Stem-Norland
-0.3
-0.0
+0.1
-0.1
+0.2
plant
Norland
-0.5
+0.1
+0.3
+0.1
-0.0
carbon source
M9+glycerol
-0.1
-0.1
+0.3
-0.3
+0.2
plant
Atlantic
+0.1
-0.2
+0.3
+0.2
-0.2
plant
Atlantic
+0.2
-0.1
+0.1
+0.4
-0.2
carbon source
M9+starch
-0.1
+0.4
+0.0
+0.2
-0.1
plant
Upstate
+0.1
-0.1
+0.3
-0.1
+0.2
carbon source
M9+glucose
+0.1
-0.1
+0.2
+0.1
+0.2
carbon source
M9+starch
-0.1
+0.3
+0.1
+0.1
+0.1
carbon source
M9+sucrose
+0.0
+0.3
+0.0
+0.2
+0.2
carbon source
M9+sucrose
+0.1
+0.2
+0.1
+0.1
+0.3
carbon source
M9+glucose+arginine
+0.3
+0.1
+0.2
+0.1
+0.2
plant
Norland
-0.1
+1.1
-0.1
+0.4
-0.1
carbon source
M9+glycerol
+0.5
+0.2
+0.1
+0.2
+0.2
control
PDB
+0.5
+0.3
-0.2
+0.5
+0.3
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DDA3937_RS17055
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