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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS16695 and DDA3937_RS16700 overlap by 4 nucleotides
DDA3937_RS16700 and DDA3937_RS16705 are separated by 152 nucleotides
DDA3937_RS16705 and DDA3937_RS16710 are separated by 235 nucleotides
DDA3937_RS16710 and DDA3937_RS16715 are separated by 17 nucleotides
DDA3937_RS16695: DDA3937_RS16695 - allantoin racemase, at 3,798,699 to 3,799,436
_RS16695
DDA3937_RS16700: DDA3937_RS16700 - GntR family transcriptional regulator, at 3,799,433 to 3,800,176
_RS16700
DDA3937_RS16705: DDA3937_RS16705 - NCS1 family nucleobase:cation symporter-1, at 3,800,329 to 3,801,813
_RS16705
DDA3937_RS16710: DDA3937_RS16710 - allophanate hydrolase, at 3,802,049 to 3,803,890
_RS16710
DDA3937_RS16715: DDA3937_RS16715 - GntR family transcriptional regulator, at 3,803,908 to 3,804,624
_RS16715
Group
Condition
DDA3937
_RS16695
DDA3937
_RS16700
DDA3937
_RS16705
DDA3937
_RS16710
DDA3937
_RS16715
carbon source
M9+starch
-0.2
-0.6
+0.0
-0.1
+0.0
carbon source
M9+glycerol
-0.4
-0.1
-0.2
-0.1
+0.0
plant
Upstate
-0.2
-0.4
+0.1
-0.2
-0.0
carbon source
M9+glucose
+0.0
-0.5
+0.0
+0.1
-0.2
plant
Stem-Norland
+0.1
+0.3
+0.0
-0.4
-0.3
control
PDB
-0.4
+0.0
+0.1
+0.4
-0.3
plant
Norland
+1.1
-0.0
-0.1
-0.3
-0.7
control
PDB
-0.2
+0.2
+0.2
+0.1
-0.3
carbon source
M9+glycerol
-0.1
+0.4
-0.1
+0.1
-0.2
plant
Norland
+0.3
-0.2
-0.2
+0.0
+0.2
plant
Atlantic
-0.0
-0.4
+0.1
+0.4
+0.1
carbon source
M9+glycerol
-0.5
+0.1
-0.0
+0.1
+0.5
plant
Atlantic
+0.3
-0.4
+0.2
-0.1
+0.2
plant
Upstate
+0.3
-0.2
+0.0
+0.2
-0.1
plant
Atlantic
+0.2
+0.2
-0.2
-0.1
+0.2
plant
Upstate
+0.4
+0.2
+0.0
-0.2
-0.0
carbon source
M9+glycerol
+0.8
-0.1
+0.2
+0.1
-0.5
plant
Stem-Norland
+0.2
-0.2
+0.1
+0.1
+0.1
plant
Norland
-0.4
+0.4
+0.3
-0.1
+0.3
plant
Upstate
+0.4
+0.3
-0.1
-0.1
+0.3
plant
Stem-Atlantic
-0.3
+0.6
-0.1
+0.1
+0.6
plant
Norland
-0.1
+0.2
+0.0
+0.2
+0.6
plant
Stem-Norland
-0.1
+0.3
+0.1
+0.3
+0.4
plant
Stem-Norland
-0.4
+0.7
+0.2
+0.3
+0.4
control
PDB
+0.3
-0.0
+0.3
+0.3
+0.3
plant
Atlantic
+0.5
+0.3
-0.1
+0.1
+0.6
control
PDB
+0.8
+0.4
-0.1
+0.2
+0.3
plant
Stem-Atlantic
+0.2
+0.6
-0.0
+0.3
+0.4
control
PDB
+0.7
+0.4
+0.1
+0.4
+0.2
control
PDB
+0.8
+0.7
-0.1
+0.3
+0.1
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