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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS16535 and DDA3937_RS16540 are separated by 125 nucleotides
DDA3937_RS16540 and DDA3937_RS16545 are separated by 157 nucleotides
DDA3937_RS16545 and DDA3937_RS16550 are separated by 4 nucleotides
DDA3937_RS16550 and DDA3937_RS16555 are separated by 101 nucleotides
DDA3937_RS16535: DDA3937_RS16535 - glutamate 5-kinase, at 3,766,313 to 3,767,416
_RS16535
DDA3937_RS16540: DDA3937_RS16540 - sigma factor-binding protein Crl, at 3,767,542 to 3,767,901
_RS16540
DDA3937_RS16545: DDA3937_RS16545 - diguanylate cyclase, at 3,768,059 to 3,769,327
_RS16545
DDA3937_RS16550: DDA3937_RS16550 - YfiR family protein, at 3,769,332 to 3,769,868
_RS16550
DDA3937_RS16555: DDA3937_RS16555 - esterase FrsA, at 3,769,970 to 3,771,220
_RS16555
Group
Condition
DDA3937
_RS16535
DDA3937
_RS16540
DDA3937
_RS16545
DDA3937
_RS16550
DDA3937
_RS16555
carbon source
M9+starch
-5.7
-0.7
+0.1
-0.5
+0.1
carbon source
M9+starch
-5.0
-1.1
+0.1
-0.3
-0.1
carbon source
M9+starch
-5.5
-0.3
+0.2
-0.3
-0.1
carbon source
M9+sucrose
-5.1
-0.1
+0.1
-0.4
-0.1
carbon source
M9+polygalacturonate
-5.7
-0.1
+0.1
+0.1
+0.0
carbon source
M9+polygalacturonate
-5.9
+0.3
+0.2
-0.1
+0.1
plant
Stem-Norland
-2.8
-2.8
+0.0
+0.3
-0.0
plant
Stem-Atlantic
-4.0
+0.3
-0.2
-1.4
-0.0
plant
Stem-Atlantic
-3.9
+0.1
+0.3
-1.2
-0.3
carbon source
M9+sucrose
-4.6
+0.5
+0.1
-0.5
-0.2
carbon source
M9+polygalacturonate
-4.6
+0.3
+0.3
+0.2
+0.0
plant
Stem-Norland
-4.5
+0.7
+0.4
+0.0
-0.3
plant
Stem-Atlantic
-4.6
+1.4
+0.2
-0.5
-0.0
plant
Stem-Atlantic
-4.3
+0.3
+0.4
+0.4
-0.3
carbon source
M9+sucrose
-3.1
+0.4
-0.1
-0.5
-0.2
carbon source
M9+glucose
-3.3
+0.7
+0.1
-0.5
+0.0
carbon source
M9+glucose+arginine
-3.0
+0.1
+0.1
-0.5
+0.2
carbon source
M9+glucose
-3.2
+0.0
+0.1
-0.1
+0.2
carbon source
M9+glucose
-3.7
+0.6
+0.2
-0.2
+0.2
plant
Stem-Atlantic
-4.7
+1.0
+0.7
+0.2
-0.1
plant
Stem-Norland
-2.8
+0.7
-0.0
+0.2
-0.6
carbon source
M9+glucose+arginine
-3.2
+0.4
+0.1
+0.3
+0.1
plant
Stem-Norland
-2.9
+0.5
+0.0
+0.4
+0.0
carbon source
M9+glycerol
-2.1
+0.9
-0.3
+0.2
-0.0
carbon source
M9+glycerol
-1.3
+0.1
-0.8
+1.2
-0.0
plant
Norland
-0.2
+2.3
-0.0
-0.3
-1.0
carbon source
M9+glycerol
-1.7
+1.9
-0.2
+1.4
-0.2
carbon source
M9+glycerol
-0.9
+2.0
-0.5
+1.2
-0.3
carbon source
M9+glycerol
-1.3
+0.4
-0.3
+2.8
+0.1
carbon source
M9+glycerol
-0.5
+1.3
-0.6
+2.0
+0.1
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