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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS16370 and DDA3937_RS16375 are separated by 285 nucleotides
DDA3937_RS16375 and DDA3937_RS16380 are separated by 77 nucleotides
DDA3937_RS16380 and DDA3937_RS16385 are separated by 49 nucleotides
DDA3937_RS16385 and DDA3937_RS16390 are separated by 14 nucleotides
DDA3937_RS16370: DDA3937_RS16370 - sensor histidine kinase, at 3,734,077 to 3,735,768
_RS16370
DDA3937_RS16375: DDA3937_RS16375 - GntR family transcriptional regulator, at 3,736,054 to 3,736,827
_RS16375
DDA3937_RS16380: DDA3937_RS16380 - M20/M25/M40 family metallo-hydrolase, at 3,736,905 to 3,738,185
_RS16380
DDA3937_RS16385: DDA3937_RS16385 - ABC transporter substrate-binding protein, at 3,738,235 to 3,739,833
_RS16385
DDA3937_RS16390: DDA3937_RS16390 - ABC transporter permease, at 3,739,848 to 3,740,795
_RS16390
Group
Condition
DDA3937
_RS16370
DDA3937
_RS16375
DDA3937
_RS16380
DDA3937
_RS16385
DDA3937
_RS16390
control
PDB
-0.3
-0.1
-0.4
-0.1
-0.1
plant
Upstate
-0.1
-0.1
-0.8
+0.0
+0.4
plant
Stem-Norland
-0.6
+0.1
-0.1
+0.1
+0.1
plant
Norland
-0.3
+0.2
-0.5
+0.2
+0.1
plant
Upstate
-0.1
+0.2
-0.4
+0.1
-0.1
plant
Atlantic
-0.1
-0.3
-0.1
+0.3
+0.1
plant
Upstate
-0.2
+0.2
-0.4
+0.2
+0.1
carbon source
M9+glycerol
-0.2
+0.4
+0.1
-0.2
-0.0
plant
Stem-Norland
-0.1
+0.8
-0.4
-0.1
-0.1
plant
Upstate
-0.2
+0.3
-0.5
+0.2
+0.3
plant
Atlantic
-0.2
-0.2
+0.2
+0.1
+0.4
plant
Norland
-0.4
+0.8
-0.2
-0.2
+0.3
carbon source
M9+glycerol
-0.5
+0.4
+0.5
+0.0
-0.2
control
PDB
-0.4
+0.7
-0.2
+0.2
+0.1
plant
Norland
-0.2
+0.2
+0.4
+0.1
-0.0
plant
Upstate
-0.1
+0.9
-0.4
+0.1
+0.0
control
PDB
+0.1
+0.4
-0.2
+0.3
-0.2
carbon source
M9+glycerol
-0.3
+0.2
+0.4
+0.1
+0.1
plant
Upstate
-0.1
+0.4
-0.1
+0.2
+0.2
plant
Stem-Atlantic
-0.0
+0.3
-0.2
+0.4
+0.1
plant
Stem-Norland
-0.1
+0.3
+0.4
+0.2
-0.2
control
PDB
+0.3
-0.2
+0.4
+0.3
-0.1
plant
Stem-Norland
-0.2
+0.1
+0.5
+0.1
+0.2
carbon source
M9+glycerol
-0.4
+0.2
+0.6
+0.4
-0.1
carbon source
M9+glucose
-0.0
+0.3
+0.1
+0.1
+0.3
carbon source
M9+glycerol
-0.3
+0.5
+0.5
+0.2
-0.0
plant
Stem-Atlantic
-0.1
+0.3
+0.3
+0.0
+0.4
control
PDB
-0.1
+0.6
+0.1
+0.0
+0.2
plant
Norland
+0.0
+1.1
-0.5
+0.2
+0.2
plant
Norland
-0.0
+0.4
+0.6
+0.2
-0.0
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