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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS15995 and DDA3937_RS16000 are separated by 7 nucleotides
DDA3937_RS16000 and DDA3937_RS16005 are separated by 238 nucleotides
DDA3937_RS16005 and DDA3937_RS16010 are separated by 108 nucleotides
DDA3937_RS16010 and DDA3937_RS16015 are separated by 30 nucleotides
DDA3937_RS15995: DDA3937_RS15995 - ABC transporter ATP-binding protein, at 3,657,024 to 3,658,088
_RS15995
DDA3937_RS16000: DDA3937_RS16000 - iron ABC transporter permease, at 3,658,096 to 3,659,703
_RS16000
DDA3937_RS16005: DDA3937_RS16005 - YacC family pilotin-like protein, at 3,659,942 to 3,660,289
_RS16005
DDA3937_RS16010: DDA3937_RS16010 - polyamine aminopropyltransferase, at 3,660,398 to 3,661,261
_RS16010
DDA3937_RS16015: DDA3937_RS16015 - adenosylmethionine decarboxylase, at 3,661,292 to 3,662,086
_RS16015
Group
Condition
DDA3937
_RS15995
DDA3937
_RS16000
DDA3937
_RS16005
DDA3937
_RS16010
DDA3937
_RS16015
carbon source
M9+glucose+arginine
+0.4
+0.0
-0.2
-1.5
-1.0
plant
Stem-Norland
+0.0
-0.1
-0.9
-0.9
-0.2
plant
Stem-Norland
-0.0
+0.1
-0.2
-1.2
-0.3
control
PDB
+0.9
-0.3
-2.0
-0.3
-0.1
plant
Stem-Atlantic
+0.2
-0.2
+0.3
-1.1
-0.7
carbon source
M9+glucose
+0.1
-0.0
-0.0
-1.0
-0.7
plant
Stem-Atlantic
-0.0
-0.1
+0.1
-1.1
-0.4
plant
Upstate
+0.2
-0.1
-0.7
-0.6
-0.3
carbon source
M9+glucose+arginine
+0.2
+0.1
-0.2
-0.6
-0.7
carbon source
M9+glucose+arginine
+0.4
+0.0
+0.1
-1.2
-0.5
carbon source
M9+glucose
+0.3
+0.1
+0.2
-1.0
-0.5
plant
Stem-Norland
-0.1
-0.0
+0.8
-1.2
-0.1
plant
Stem-Atlantic
+0.1
+0.1
+1.1
-1.1
-0.7
plant
Stem-Norland
-0.0
+0.1
+0.6
-0.7
-0.4
carbon source
M9+glucose
+0.3
+0.0
+0.5
-1.1
-0.3
plant
Stem-Atlantic
-0.1
+0.0
+0.6
-0.8
-0.1
control
PDB
+0.9
-0.4
-0.8
-0.2
+0.1
control
PDB
+0.7
-0.5
-0.7
+0.0
+0.2
control
PDB
+0.4
-0.4
-0.7
+0.2
+0.5
plant
Stem-Atlantic
-0.0
-0.2
+1.4
-0.7
-0.2
control
PDB
+0.5
+0.0
-1.1
+0.6
+0.9
plant
Atlantic
+0.3
+0.1
+0.7
-0.3
+0.2
carbon source
M9+glycerol
-0.1
-0.4
+0.9
+0.3
+0.6
control
PDB
+0.7
-0.5
-0.1
+0.5
+0.6
plant
Atlantic
+0.5
-0.1
+1.5
-0.6
+0.3
carbon source
M9+glycerol
+0.0
-0.1
+1.1
-0.1
+0.8
carbon source
M9+glycerol
+0.1
-0.1
+1.1
+0.3
+0.6
plant
Atlantic
+0.1
+0.1
+2.0
-0.2
+0.1
carbon source
M9+glycerol
+0.0
-0.0
+1.4
+0.2
+0.7
carbon source
M9+glycerol
+0.3
+0.1
+1.1
+0.2
+0.6
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