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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS15965 and DDA3937_RS15970 are separated by 69 nucleotides
DDA3937_RS15970 and DDA3937_RS15975 overlap by 4 nucleotides
DDA3937_RS15975 and DDA3937_RS15980 are separated by 126 nucleotides
DDA3937_RS15980 and DDA3937_RS15985 are separated by 44 nucleotides
DDA3937_RS15965: DDA3937_RS15965 - aspartate 1-decarboxylase, at 3,652,309 to 3,652,689
_RS15965
DDA3937_RS15970: DDA3937_RS15970 - ABC transporter permease, at 3,652,759 to 3,653,529
_RS15970
DDA3937_RS15975: DDA3937_RS15975 - ABC transporter ATP-binding protein, at 3,653,526 to 3,654,449
_RS15975
DDA3937_RS15980: DDA3937_RS15980 - carbonate dehydratase, at 3,654,576 to 3,655,217
_RS15980
DDA3937_RS15985: DDA3937_RS15985 - hypoxanthine phosphoribosyltransferase, at 3,655,262 to 3,655,792
_RS15985
Group
Condition
DDA3937
_RS15965
DDA3937
_RS15970
DDA3937
_RS15975
DDA3937
_RS15980
DDA3937
_RS15985
carbon source
M9+glycerol
-2.9
-0.2
-0.3
N.D.
-0.4
carbon source
M9+sucrose
-3.5
-0.0
+0.1
N.D.
+0.2
carbon source
M9+glycerol
-2.8
-0.1
-0.3
N.D.
-0.1
carbon source
M9+sucrose
-3.5
-0.1
+0.3
N.D.
+0.0
carbon source
M9+glycerol
-3.0
-0.1
+0.1
N.D.
-0.2
carbon source
M9+sucrose
-3.3
+0.1
+0.0
N.D.
+0.1
carbon source
M9+glycerol
-3.2
+0.0
-0.2
N.D.
+0.2
carbon source
M9+glucose
-3.5
+0.2
-0.0
N.D.
+0.2
carbon source
M9+glucose
-3.1
-0.1
+0.1
N.D.
+0.5
carbon source
M9+glucose+arginine
-3.1
+0.4
+0.4
N.D.
-0.1
carbon source
M9+glycerol
-1.4
-0.5
-0.2
N.D.
-0.4
carbon source
M9+glucose
-2.9
+0.2
+0.4
N.D.
+0.2
carbon source
M9+glucose+arginine
-2.7
+0.3
+0.1
N.D.
+0.1
carbon source
M9+glucose+arginine
-3.0
+0.4
+0.4
N.D.
+0.1
carbon source
M9+polygalacturonate
-2.2
+0.1
-0.2
N.D.
+0.3
carbon source
M9+starch
-1.8
-0.0
-0.1
N.D.
+0.0
carbon source
M9+polygalacturonate
-2.4
+0.1
+0.2
N.D.
+0.3
carbon source
M9+starch
-1.9
+0.0
+0.1
N.D.
+0.1
carbon source
M9+polygalacturonate
-2.1
+0.1
+0.3
N.D.
+0.3
carbon source
M9+glycerol
-1.2
-0.1
-0.3
N.D.
+0.4
carbon source
M9+starch
-2.0
+0.2
+0.0
N.D.
+0.6
plant
Stem-Atlantic
+0.2
+0.1
-0.7
N.D.
+0.5
plant
Upstate
-0.1
+0.5
-0.2
N.D.
+0.9
plant
Atlantic
+0.2
+0.2
+0.4
N.D.
+0.8
control
PDB
+0.0
-0.4
-0.4
N.D.
+2.9
control
PDB
+0.1
-0.1
-0.7
N.D.
+3.1
control
PDB
+0.2
-0.1
-0.8
N.D.
+3.3
control
PDB
+0.6
-0.3
-0.1
N.D.
+2.9
control
PDB
+0.2
-0.1
+0.0
N.D.
+3.4
control
PDB
+0.2
-0.2
+0.4
N.D.
+3.2
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