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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS15770 and DDA3937_RS15775 are separated by 46 nucleotides
DDA3937_RS15775 and DDA3937_RS15780 are separated by 134 nucleotides
DDA3937_RS15780 and DDA3937_RS15785 are separated by 261 nucleotides
DDA3937_RS15785 and DDA3937_RS15790 are separated by 443 nucleotides
DDA3937_RS15770: DDA3937_RS15770 - L-aspartate oxidase, at 3,611,730 to 3,613,331
_RS15770
DDA3937_RS15775: DDA3937_RS15775 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 3,613,378 to 3,614,121
_RS15775
DDA3937_RS15780: DDA3937_RS15780 - ATP-dependent RNA helicase SrmB, at 3,614,256 to 3,615,608
_RS15780
DDA3937_RS15785: DDA3937_RS15785 - autonomous glycyl radical cofactor GrcA, at 3,615,870 to 3,616,253
_RS15785
DDA3937_RS15790: DDA3937_RS15790 - uracil-DNA glycosylase, at 3,616,697 to 3,617,383
_RS15790
Group
Condition
DDA3937
_RS15770
DDA3937
_RS15775
DDA3937
_RS15780
DDA3937
_RS15785
DDA3937
_RS15790
carbon source
M9+glucose
-3.5
-0.4
-2.6
-0.3
-0.1
carbon source
M9+glucose
-3.3
+0.0
-2.9
+0.1
-0.2
carbon source
M9+sucrose
-3.4
-0.3
-1.9
-0.3
-0.1
carbon source
M9+glucose
-3.1
+0.1
-2.3
-0.2
-0.5
carbon source
M9+glucose+arginine
-2.5
-0.1
-3.0
+0.0
-0.0
carbon source
M9+glucose+arginine
-2.6
+0.0
-2.6
+0.0
-0.2
carbon source
M9+sucrose
-3.5
+0.1
-1.6
-0.0
-0.1
carbon source
M9+glucose+arginine
-2.5
-0.1
-2.4
+0.1
-0.1
carbon source
M9+sucrose
-2.8
-0.5
-1.8
+0.0
+0.0
plant
Stem-Atlantic
+0.1
-0.5
-2.2
-1.0
+0.2
carbon source
M9+starch
-0.3
-0.4
-1.4
-0.7
-0.1
carbon source
M9+polygalacturonate
-1.3
+0.0
-1.4
-0.1
-0.1
carbon source
M9+polygalacturonate
-1.1
-0.4
-0.8
+0.1
-0.3
control
PDB
+0.1
-0.5
-0.6
-0.4
-1.1
plant
Stem-Atlantic
+0.2
-0.7
-1.9
-0.0
-0.1
plant
Stem-Norland
+0.2
-0.3
-2.2
-0.1
+0.1
control
PDB
-0.2
-0.4
-0.5
-0.3
-0.7
plant
Stem-Atlantic
-0.0
+0.2
-1.9
-0.3
-0.0
carbon source
M9+polygalacturonate
-1.2
-0.2
-0.8
+0.2
+0.1
plant
Stem-Norland
-0.1
+0.2
-1.6
-0.3
-0.1
plant
Stem-Norland
+0.0
-0.1
-2.0
+0.7
-0.3
plant
Stem-Norland
+0.3
-0.5
-2.1
+0.2
+0.3
plant
Stem-Norland
+0.2
+0.3
-1.8
-0.6
+0.3
plant
Stem-Atlantic
+0.0
+0.6
-1.6
+0.3
-0.3
plant
Stem-Atlantic
-0.0
+0.9
-1.9
+0.0
-0.1
carbon source
M9+glycerol
-1.0
+0.2
+1.0
-0.4
-0.2
plant
Atlantic
+0.0
-0.6
-0.6
+0.6
+0.4
carbon source
M9+glycerol
-1.1
-0.3
+0.8
+0.1
+0.3
carbon source
M9+glycerol
-0.8
-0.3
+1.3
+0.1
+0.0
carbon source
M9+glycerol
-0.7
+0.6
+1.8
+0.5
-0.1
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DDA3937_RS15780
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