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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS15680 and DDA3937_RS15690 are separated by 725 nucleotides
DDA3937_RS15690 and DDA3937_RS15695 overlap by 14 nucleotides
DDA3937_RS15695 and DDA3937_RS15700 are separated by 13 nucleotides
DDA3937_RS15700 and DDA3937_RS15705 are separated by 776 nucleotides
DDA3937_RS15680: DDA3937_RS15680 - tryptophan synthase subunit beta, at 3,594,083 to 3,594,424
_RS15680
DDA3937_RS15690: DDA3937_RS15690 - type I secretion system permease/ATPase, at 3,595,150 to 3,597,336
_RS15690
DDA3937_RS15695: DDA3937_RS15695 - HlyD family efflux transporter periplasmic adaptor subunit, at 3,597,323 to 3,598,168
_RS15695
DDA3937_RS15700: DDA3937_RS15700 - sensor domain-containing diguanylate cyclase, at 3,598,182 to 3,599,699
_RS15700
DDA3937_RS15705: DDA3937_RS15705 - cyclic-guanylate-specific phosphodiesterase, at 3,600,476 to 3,601,267
_RS15705
Group
Condition
DDA3937
_RS15680
DDA3937
_RS15690
DDA3937
_RS15695
DDA3937
_RS15700
DDA3937
_RS15705
plant
Stem-Norland
-1.0
+0.6
+0.6
+1.2
-3.0
plant
Stem-Atlantic
-0.8
+1.2
+1.0
+2.2
-4.8
plant
Stem-Atlantic
-0.6
+1.1
+0.9
+2.0
-3.2
plant
Stem-Norland
-1.9
+0.8
+0.8
+1.7
-1.2
plant
Stem-Atlantic
-0.7
+1.0
+1.1
+2.1
-2.9
plant
Stem-Norland
-0.8
+1.1
+1.0
+1.8
-1.8
plant
Stem-Norland
-0.8
+1.2
+1.6
+3.5
-3.8
plant
Stem-Norland
-0.3
+1.2
+1.5
+2.1
-2.8
carbon source
M9+glucose+arginine
-0.9
+1.4
+1.3
+1.5
-0.9
carbon source
M9+glucose
-0.6
+1.2
+1.2
+1.4
-0.7
plant
Stem-Atlantic
-1.4
+1.5
+1.5
+3.7
-2.8
carbon source
M9+glycerol
+0.2
-0.7
-0.6
-0.9
+4.9
carbon source
M9+glucose
-1.0
+1.2
+1.2
+1.2
+0.3
carbon source
M9+glucose+arginine
-0.5
+1.3
+1.4
+1.3
-0.5
carbon source
M9+glycerol
-0.2
-0.0
+0.2
-0.1
+3.3
carbon source
M9+glycerol
+0.2
-0.7
-0.6
-0.9
+5.1
carbon source
M9+glucose
-0.9
+1.4
+1.3
+1.5
-0.1
plant
Upstate
+0.5
+0.1
-0.2
+0.2
+2.7
plant
Upstate
-0.6
+1.2
+0.5
+0.5
+1.8
carbon source
M9+glycerol
+0.3
-0.5
-0.3
-0.6
+4.5
plant
Atlantic
+0.3
+0.2
+0.2
+0.8
+2.0
plant
Upstate
-0.1
+0.1
+0.2
+0.5
+3.0
plant
Stem-Atlantic
+0.2
+1.8
+1.4
+3.1
-2.6
carbon source
M9+glucose+arginine
-0.2
+1.4
+1.2
+1.4
+0.1
plant
Upstate
+0.5
+0.3
+0.3
+0.3
+2.8
carbon source
M9+glycerol
+0.0
-0.7
-0.4
-0.8
+6.4
carbon source
M9+glycerol
+0.4
-0.5
-0.3
-0.5
+5.9
plant
Upstate
+0.3
+0.1
+0.3
+0.5
+4.2
plant
Atlantic
+0.9
+0.1
+0.0
+0.8
+4.3
plant
Atlantic
-0.0
+0.5
+0.5
+0.4
+4.7
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DDA3937_RS15695
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