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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS15470 and DDA3937_RS15475 overlap by 11 nucleotides
DDA3937_RS15475 and DDA3937_RS15480 are separated by 200 nucleotides
DDA3937_RS15480 and DDA3937_RS15485 are separated by 205 nucleotides
DDA3937_RS15485 and DDA3937_RS15495 are separated by 483 nucleotides
DDA3937_RS15470: DDA3937_RS15470 - cytoskeleton protein RodZ, at 3,546,494 to 3,547,495
_RS15470
DDA3937_RS15475: DDA3937_RS15475 - type IV pilus biogenesis/stability protein PilW, at 3,547,485 to 3,548,240
_RS15475
DDA3937_RS15480: DDA3937_RS15480 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 3,548,441 to 3,549,586
_RS15480
DDA3937_RS15485: DDA3937_RS15485 - nucleoside-diphosphate kinase, at 3,549,792 to 3,550,223
_RS15485
DDA3937_RS15495: DDA3937_RS15495 - 3-mercaptopyruvate sulfurtransferase, at 3,550,707 to 3,551,561
_RS15495
Group
Condition
DDA3937
_RS15470
DDA3937
_RS15475
DDA3937
_RS15480
DDA3937
_RS15485
DDA3937
_RS15495
plant
Stem-Norland
-2.6
+0.3
+0.0
-1.9
+0.2
plant
Stem-Atlantic
-0.6
-0.3
-0.3
-0.9
-0.3
carbon source
M9+glucose+arginine
-1.1
+0.3
-1.1
-0.8
+0.4
plant
Stem-Norland
-0.5
+0.4
-0.4
-1.4
-0.4
plant
Stem-Norland
-0.1
-0.6
-0.3
-1.3
+0.0
carbon source
M9+glycerol
-0.7
-0.1
+0.0
-1.2
-0.3
carbon source
M9+glucose
-0.3
-0.1
-1.1
-1.3
+0.7
plant
Stem-Norland
-0.1
-0.3
-0.3
-1.4
+0.2
carbon source
M9+glycerol
-0.7
+0.2
-0.2
-1.0
-0.1
carbon source
M9+glycerol
-0.9
+0.3
-0.2
-0.9
-0.0
plant
Upstate
-0.5
+0.4
-0.0
-1.5
+0.2
carbon source
M9+glycerol
-0.6
+0.4
-0.0
-0.8
-0.4
plant
Atlantic
+0.2
+0.2
-0.0
-1.6
-0.1
plant
Norland
-1.1
+0.1
-0.3
-0.4
+0.3
plant
Stem-Atlantic
-0.8
+0.5
-0.6
-0.8
+0.4
plant
Stem-Atlantic
+0.1
+0.1
-0.4
-1.4
+0.4
plant
Norland
+0.6
+0.0
-0.3
-1.4
-0.1
carbon source
M9+starch
+1.1
-0.1
-0.4
-1.7
+0.1
plant
Norland
+0.2
-0.5
-0.2
-0.9
+0.3
stress
7.5mM_PTB
+0.4
-0.5
-0.0
-1.1
+0.3
carbon source
M9+starch
+0.7
+0.2
-0.1
-1.7
-0.0
plant
Norland
+0.4
-0.3
+0.2
-1.5
+0.3
carbon source
M9+glucose+arginine
+0.2
-0.1
-0.9
-0.5
+0.7
plant
Stem-Atlantic
+1.8
-0.1
-0.2
-1.8
-0.2
carbon source
M9+glucose+arginine
+1.1
-0.0
-0.9
-1.0
+0.7
plant
Atlantic
+1.0
-0.1
+0.3
-0.9
+0.5
control
PDB
+0.8
-0.3
-0.5
+0.5
+0.6
control
PDB
+0.1
+0.3
-0.4
+0.6
+0.8
control
PDB
+0.9
+0.5
-0.1
+0.3
+0.8
control
PDB
+1.3
+0.6
-0.3
+0.8
+1.1
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