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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS15155 and DDA3937_RS15160 are separated by 596 nucleotides
DDA3937_RS15160 and DDA3937_RS15165 are separated by 48 nucleotides
DDA3937_RS15165 and DDA3937_RS15170 are separated by 210 nucleotides
DDA3937_RS15170 and DDA3937_RS15175 are separated by 22 nucleotides
DDA3937_RS15155: DDA3937_RS15155 - exopolyphosphatase, at 3,479,052 to 3,480,581
_RS15155
DDA3937_RS15160: DDA3937_RS15160 - DksA/TraR family C4-type zinc finger protein, at 3,481,178 to 3,481,444
_RS15160
DDA3937_RS15165: DDA3937_RS15165 - universal stress protein, at 3,481,493 to 3,481,921
_RS15165
DDA3937_RS15170: DDA3937_RS15170 - DUF4186 domain-containing protein, at 3,482,132 to 3,482,494
_RS15170
DDA3937_RS15175: DDA3937_RS15175 - isochorismatase family protein, at 3,482,517 to 3,483,041
_RS15175
Group
Condition
DDA3937
_RS15155
DDA3937
_RS15160
DDA3937
_RS15165
DDA3937
_RS15170
DDA3937
_RS15175
plant
Atlantic
-1.1
-0.2
-0.6
+0.3
-0.1
carbon source
M9+glycerol
-0.2
-0.0
-0.3
-0.3
-0.6
plant
Norland
-1.0
-0.6
-0.2
+0.6
-0.2
carbon source
M9+glucose
-0.8
+0.0
+0.1
-0.4
+0.1
carbon source
M9+starch
-0.5
-0.2
-0.2
+0.2
+0.2
plant
Upstate
-0.3
-0.3
-0.5
+0.0
+0.5
plant
Atlantic
+0.4
-0.6
-0.8
+0.2
+0.2
control
PDB
+1.7
-0.5
-0.9
-0.3
-0.5
carbon source
M9+glucose+arginine
-0.9
+0.6
+0.1
-0.0
-0.4
carbon source
M9+glucose
-0.6
-0.2
+0.4
-0.0
-0.1
control
LB
-0.4
+0.1
-0.3
+0.4
-0.2
plant
Norland
-0.7
-0.1
-0.1
+0.1
+0.5
plant
Atlantic
+0.1
+0.3
-0.7
+0.1
-0.1
carbon source
M9+glucose+arginine
-0.5
+0.6
-0.3
-0.2
+0.1
plant
Stem-Atlantic
+0.1
-0.5
-0.2
+0.2
+0.2
plant
Norland
-0.2
+0.6
-0.3
+0.1
-0.3
control
PDB
+1.6
-1.0
-0.2
+0.5
-0.8
plant
Stem-Norland
+0.2
+0.0
+0.6
-0.4
-0.2
plant
Norland
+0.9
-0.3
-0.2
+0.1
-0.1
plant
Stem-Atlantic
+0.3
-0.3
-0.8
+0.7
+0.6
control
PDB
+0.8
+0.4
-0.7
-0.1
+0.2
plant
Stem-Norland
+0.2
+0.7
-0.3
+0.4
-0.2
plant
Norland
+0.2
-0.3
+0.9
+0.2
-0.1
plant
Stem-Atlantic
-0.2
-0.1
+0.7
+0.5
+0.2
plant
Stem-Atlantic
+0.2
-0.2
-0.1
+1.0
+0.1
control
PDB
+1.9
+0.2
-0.5
-0.7
+0.2
carbon source
M9+glycerol
-0.0
+0.2
+0.2
+0.4
+0.6
plant
Stem-Norland
+0.7
+0.2
+0.1
+0.0
+0.4
control
PDB
+1.7
-0.1
+0.0
+0.7
-0.3
control
PDB
+2.2
-0.2
-0.0
+0.7
+0.3
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