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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS14825 and DDA3937_RS14830 are separated by 416 nucleotides
DDA3937_RS14830 and DDA3937_RS14835 are separated by 92 nucleotides
DDA3937_RS14835 and DDA3937_RS14840 are separated by 335 nucleotides
DDA3937_RS14840 and DDA3937_RS14845 are separated by 6 nucleotides
DDA3937_RS14825: DDA3937_RS14825 - alanine transaminase, at 3,401,830 to 3,403,053
_RS14825
DDA3937_RS14830: DDA3937_RS14830 - D-amino-acid transaminase, at 3,403,470 to 3,404,330
_RS14830
DDA3937_RS14835: DDA3937_RS14835 - mechanosensitive ion channel family protein, at 3,404,423 to 3,406,867
_RS14835
DDA3937_RS14840: DDA3937_RS14840 - tRNA-Arg, at 3,407,203 to 3,407,279
_RS14840
DDA3937_RS14845: DDA3937_RS14845 - tail fiber assembly protein, at 3,407,286 to 3,407,591
_RS14845
Group
Condition
DDA3937
_RS14825
DDA3937
_RS14830
DDA3937
_RS14835
DDA3937
_RS14840
DDA3937
_RS14845
control
PDB
+0.2
+0.2
-0.2
N.D.
-1.3
plant
Stem-Atlantic
-0.3
-0.4
-0.0
N.D.
-0.3
plant
Atlantic
-0.1
-0.2
+0.1
N.D.
-0.7
control
LB
-0.0
-0.5
-0.2
N.D.
-0.1
plant
Stem-Atlantic
-0.4
+0.6
+0.2
N.D.
-1.0
carbon source
M9+glycerol
+0.2
-0.2
+0.1
N.D.
-0.5
plant
Upstate
+0.1
+0.2
-0.2
N.D.
-0.4
plant
Norland
+0.3
+0.0
-0.0
N.D.
-0.5
carbon source
M9+glucose+arginine
+0.3
-0.0
-0.1
N.D.
-0.4
plant
Stem-Norland
-0.4
-0.8
+0.0
N.D.
+1.0
control
LB
-0.2
-0.3
+0.1
N.D.
+0.3
carbon source
M9+glucose
+0.3
-0.1
+0.1
N.D.
-0.3
plant
Stem-Atlantic
+0.1
+0.4
-0.2
N.D.
-0.3
plant
Norland
+0.0
+0.5
-0.0
N.D.
-0.5
plant
Stem-Norland
-0.0
-0.4
+0.2
N.D.
+0.3
plant
Upstate
+0.4
+0.2
+0.1
N.D.
-0.4
control
PDB
+0.2
+0.6
-0.0
N.D.
-0.4
plant
Upstate
+0.4
+0.3
+0.1
N.D.
-0.3
control
PDB
+0.4
+0.3
-0.0
N.D.
-0.2
carbon source
M9+glycerol
+0.3
+0.4
+0.0
N.D.
-0.3
plant
Atlantic
-0.1
+0.3
-0.1
N.D.
+0.5
control
PDB
+0.2
+0.3
+0.3
N.D.
-0.1
plant
Norland
-0.0
+0.3
-0.1
N.D.
+0.4
control
PDB
-0.2
+0.8
+0.1
N.D.
+0.0
carbon source
M9+glycerol
-0.0
+0.5
+0.1
N.D.
+0.3
plant
Norland
+0.3
+0.7
+0.1
N.D.
-0.1
control
PDB
+0.4
+0.3
+0.3
N.D.
-0.1
carbon source
M9+glycerol
-0.0
-0.1
+0.0
N.D.
+1.1
carbon source
M9+glycerol
+0.1
+0.3
+0.3
N.D.
+0.8
plant
Upstate
+0.2
+0.2
+0.0
N.D.
+1.3
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