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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS23435 and DDA3937_RS14815 are separated by 241 nucleotides
DDA3937_RS14815 and DDA3937_RS14820 are separated by 34 nucleotides
DDA3937_RS14820 and DDA3937_RS14825 are separated by 158 nucleotides
DDA3937_RS14825 and DDA3937_RS14830 are separated by 416 nucleotides
DDA3937_RS23435: DDA3937_RS23435 - hypothetical protein, at 3,400,131 to 3,400,331
_RS23435
DDA3937_RS14815: DDA3937_RS14815 - type II secretion system assembly factor GspB, at 3,400,573 to 3,401,235
_RS14815
DDA3937_RS14820: DDA3937_RS14820 - GspS family T2SS pilot lipoprotein variant OutS, at 3,401,270 to 3,401,671
_RS14820
DDA3937_RS14825: DDA3937_RS14825 - alanine transaminase, at 3,401,830 to 3,403,053
_RS14825
DDA3937_RS14830: DDA3937_RS14830 - D-amino-acid transaminase, at 3,403,470 to 3,404,330
_RS14830
Group
Condition
DDA3937
_RS23435
DDA3937
_RS14815
DDA3937
_RS14820
DDA3937
_RS14825
DDA3937
_RS14830
plant
Stem-Atlantic
-0.2
-0.1
-0.5
-0.3
-0.4
plant
Stem-Norland
+0.5
-0.6
+0.1
-0.4
-0.8
carbon source
M9+sucrose
-0.3
-0.1
-0.5
+0.2
-0.3
plant
Stem-Norland
-0.4
+0.1
-0.2
-0.0
-0.4
carbon source
M9+glucose
+0.2
-0.0
-0.8
+0.1
-0.3
plant
Stem-Atlantic
+0.0
+0.1
-1.0
-0.4
+0.6
carbon source
M9+glucose
+0.6
-0.5
-0.8
+0.3
-0.1
carbon source
M9+glucose
+0.5
-0.3
-0.8
+0.3
-0.1
carbon source
M9+sucrose
+0.0
+0.2
-0.5
+0.2
-0.3
control
PDB
-0.5
+0.4
-0.8
-0.2
+0.8
carbon source
M9+glycerol
+0.5
-0.5
-0.3
+0.2
-0.1
carbon source
M9+glucose+arginine
+0.7
-0.0
-1.0
+0.1
-0.0
plant
Atlantic
-0.7
+0.1
+0.1
+0.3
-0.0
carbon source
M9+glycerol
+0.7
-0.0
-0.4
-0.0
-0.1
carbon source
M9+glycerol
+0.2
-0.2
-0.2
+0.1
+0.3
plant
Atlantic
+0.2
+0.2
-0.4
-0.1
+0.3
carbon source
M9+glycerol
+0.3
+0.3
-0.3
+0.2
-0.2
control
PDB
-0.5
+0.3
-0.1
+0.4
+0.3
carbon source
M9+glucose+arginine
+0.5
-0.0
-0.3
+0.3
-0.0
control
PDB
+0.6
+0.1
-0.9
+0.4
+0.3
plant
Atlantic
+0.6
-0.0
-0.3
+0.2
+0.2
plant
Stem-Atlantic
-0.1
+0.5
-0.0
+0.1
+0.4
plant
Atlantic
-0.1
+0.5
+0.1
-0.1
+0.3
control
PDB
+0.2
-0.3
+0.5
+0.2
+0.3
carbon source
M9+glycerol
+0.1
+0.2
-0.1
+0.3
+0.4
plant
Upstate
+0.3
+0.1
-0.0
+0.4
+0.3
plant
Norland
+0.2
+0.4
-0.3
+0.3
+0.7
plant
Upstate
+0.2
+0.7
+0.3
+0.0
+0.3
control
PDB
+0.0
+0.5
+0.5
+0.2
+0.6
plant
Norland
+0.1
+0.7
+0.6
+0.0
+0.5
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