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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS14765 and DDA3937_RS14770 overlap by 4 nucleotides
DDA3937_RS14770 and DDA3937_RS14775 overlap by 4 nucleotides
DDA3937_RS14775 and DDA3937_RS14780 are separated by 3 nucleotides
DDA3937_RS14780 and DDA3937_RS14785 are separated by 2 nucleotides
DDA3937_RS14765: DDA3937_RS14765 - type II secretion system minor pseudopilin GspK, at 3,390,238 to 3,391,287
_RS14765
DDA3937_RS14770: DDA3937_RS14770 - type II secretion system minor pseudopilin GspJ, at 3,391,284 to 3,392,024
_RS14770
DDA3937_RS14775: DDA3937_RS14775 - type II secretion system minor pseudopilin GspI, at 3,392,021 to 3,392,398
_RS14775
DDA3937_RS14780: DDA3937_RS14780 - type II secretion system minor pseudopilin GspH, at 3,392,402 to 3,392,941
_RS14780
DDA3937_RS14785: DDA3937_RS14785 - type II secretion system major pseudopilin GspG, at 3,392,944 to 3,393,405
_RS14785
Group
Condition
DDA3937
_RS14765
DDA3937
_RS14770
DDA3937
_RS14775
DDA3937
_RS14780
DDA3937
_RS14785
carbon source
M9+glucose
-0.7
-1.0
-2.1
-1.4
-1.0
carbon source
M9+glucose
-0.7
-0.4
-1.1
-0.9
-1.4
carbon source
M9+glucose
-0.8
-0.6
-1.2
-1.2
-0.6
carbon source
M9+glucose+arginine
-0.8
-0.6
-0.7
-0.4
-0.8
carbon source
M9+glucose+arginine
-0.4
-0.9
-0.3
-0.9
-0.6
carbon source
M9+sucrose
-0.5
-0.5
-0.4
-1.2
-0.4
carbon source
M9+sucrose
-0.7
-0.4
+0.1
-1.0
-0.6
control
PDB
-0.4
-0.0
-2.7
+0.3
+0.3
carbon source
M9+glucose+arginine
-0.2
-0.4
-1.1
-0.4
-0.4
plant
Stem-Norland
-0.7
-0.9
+0.1
-0.7
-0.4
carbon source
M9+sucrose
-0.4
-0.2
-1.0
-0.3
-0.6
carbon source
M9+glycerol
+0.1
-0.4
-1.2
-0.3
-0.4
plant
Stem-Norland
-0.1
-0.4
-0.6
-0.7
-0.5
carbon source
M9+glycerol
-0.2
-0.1
-0.5
-0.7
-0.6
plant
Stem-Norland
-0.0
-0.2
-1.2
-0.3
+0.1
control
PDB
+0.2
+0.1
-1.6
-0.2
-0.1
plant
Stem-Atlantic
+0.3
-0.2
-1.1
-1.0
+0.3
carbon source
M9+glycerol
-0.2
-0.3
-0.6
-0.3
-0.2
plant
Stem-Norland
+0.3
-0.7
-0.7
-0.1
-0.3
plant
Stem-Atlantic
-0.2
+0.4
+0.1
-0.5
-0.9
control
PDB
+0.3
+0.4
-1.8
+0.0
-0.1
control
LB
-0.0
-0.1
-0.8
+0.3
-0.3
plant
Stem-Atlantic
-0.3
-0.2
+1.2
-0.8
-0.7
plant
Upstate
+0.2
+0.2
-0.7
+0.3
+0.3
plant
Atlantic
+0.2
+0.4
+0.6
+0.2
+0.3
plant
Upstate
+0.5
+0.0
+0.6
+0.6
-0.0
control
PDB
+0.1
+0.6
+0.9
+0.4
-0.1
plant
Norland
+0.3
+0.4
+0.4
+0.5
+0.7
plant
Norland
-0.0
+0.1
+1.9
+0.3
+0.0
plant
Upstate
+0.1
+0.4
+2.3
-0.1
+0.1
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DDA3937_RS14775
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