Fitness for 5 genes in Dickeya dadantii 3937

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500 ntDDA3937_RS23295 and DDA3937_RS14750 are separated by 198 nucleotidesDDA3937_RS14750 and DDA3937_RS14755 are separated by 184 nucleotidesDDA3937_RS14755 and DDA3937_RS14760 overlap by 4 nucleotidesDDA3937_RS14760 and DDA3937_RS14765 overlap by 4 nucleotides DDA3937_RS23295: DDA3937_RS23295 - membrane protein YpdK, at 3,387,260 to 3,387,319 _RS23295 DDA3937_RS14750: DDA3937_RS14750 - prepilin peptidase, at 3,387,518 to 3,388,369 _RS14750 DDA3937_RS14755: DDA3937_RS14755 - type II secretion system protein M, at 3,388,554 to 3,389,042 _RS14755 DDA3937_RS14760: DDA3937_RS14760 - type II secretion system protein GspL, at 3,389,039 to 3,390,241 _RS14760 DDA3937_RS14765: DDA3937_RS14765 - type II secretion system minor pseudopilin GspK, at 3,390,238 to 3,391,287 _RS14765
Group Condition DDA3937_RS23295 DDA3937_RS14750 DDA3937_RS14755 DDA3937_RS14760 DDA3937_RS14765
plant Stem-Norland N.D. -1.8 -0.9 -0.7 -0.7
carbon source M9+glucose N.D. -1.4 -0.9 -0.7 -0.7
carbon source M9+glucose N.D. -1.3 -0.7 -1.0 -0.7
carbon source M9+glucose+arginine N.D. -0.7 -0.7 -0.7 -0.2
carbon source M9+glucose+arginine N.D. -0.8 -0.5 -0.6 -0.4
carbon source M9+glucose+arginine N.D. -0.3 -0.5 -0.7 -0.8
carbon source M9+sucrose N.D. -0.7 -0.7 -0.4 -0.5
carbon source M9+glucose N.D. -0.6 -0.2 -0.5 -0.8
carbon source M9+sucrose N.D. -0.7 -0.3 -0.4 -0.7
control PDB N.D. -1.2 +0.0 -0.1 -0.5
carbon source M9+glycerol N.D. -0.7 -0.6 -0.5 +0.2
carbon source M9+glycerol N.D. -0.9 -0.5 -0.2 +0.1
plant Stem-Atlantic N.D. -1.2 -0.1 -0.2 +0.1
carbon source M9+sucrose N.D. -0.3 -0.4 -0.3 -0.4
carbon source M9+glycerol N.D. -0.2 -0.6 -0.1 -0.2
plant Stem-Atlantic N.D. -0.8 +0.1 +0.0 -0.3
control LB N.D. -0.6 +0.1 -0.2 -0.0
plant Stem-Norland N.D. -0.6 +0.1 -0.1 -0.1
plant Stem-Norland N.D. -0.7 -0.3 -0.0 +0.3
control PDB N.D. -0.0 -0.4 +0.4 +0.2
plant Upstate N.D. -0.4 -0.1 +0.1 +0.5
control PDB N.D. -0.4 +0.1 +0.4 +0.1
plant Atlantic N.D. -0.2 +0.2 +0.2 +0.3
plant Norland N.D. +0.6 -0.3 +0.1 +0.0
control PDB N.D. +0.6 +0.0 +0.4 -0.4
carbon source M9+starch N.D. -0.2 +0.5 +0.1 +0.2
plant Atlantic N.D. -0.2 +0.1 +0.3 +0.4
plant Upstate N.D. +1.0 +0.2 +0.2 +0.1
control PDB N.D. +1.2 +0.1 +0.3 +0.0
plant Norland N.D. +0.9 +0.8 +0.8 +0.3
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DDA3937_RS23295
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DDA3937_RS14750
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DDA3937_RS14765
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