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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS14650 and DDA3937_RS14655 are separated by 412 nucleotides
DDA3937_RS14655 and DDA3937_RS14660 are separated by 34 nucleotides
DDA3937_RS14660 and DDA3937_RS14665 are separated by 259 nucleotides
DDA3937_RS14665 and DDA3937_RS14670 are separated by 42 nucleotides
DDA3937_RS14650: DDA3937_RS14650 - avirulence protein, at 3,355,236 to 3,357,092
_RS14650
DDA3937_RS14655: DDA3937_RS14655 - Fe2+-enterobactin ABC transporter substrate-binding protein, at 3,357,505 to 3,358,560
_RS14655
DDA3937_RS14660: DDA3937_RS14660 - enterobactin transporter EntS, at 3,358,595 to 3,359,875
_RS14660
DDA3937_RS14665: DDA3937_RS14665 - Fe(3+)-siderophore ABC transporter permease, at 3,360,135 to 3,361,211
_RS14665
DDA3937_RS14670: DDA3937_RS14670 - iron-enterobactin ABC transporter permease, at 3,361,254 to 3,362,288
_RS14670
Group
Condition
DDA3937
_RS14650
DDA3937
_RS14655
DDA3937
_RS14660
DDA3937
_RS14665
DDA3937
_RS14670
plant
Upstate
-0.0
-1.2
-0.3
-1.1
-1.3
plant
Upstate
+0.3
-0.9
-0.1
-1.0
-1.9
plant
Norland
+0.0
-1.2
-0.3
-1.5
-0.6
carbon source
M9+glycerol
-0.1
-0.4
-1.0
-1.1
-0.6
plant
Upstate
+0.0
-0.9
+0.0
-1.0
-1.3
carbon source
M9+glycerol
-0.0
-0.5
-0.5
-0.8
-1.0
plant
Norland
-0.1
-1.2
-0.5
-0.9
-0.0
carbon source
M9+glycerol
+0.1
-0.4
-0.7
-0.8
-0.7
plant
Norland
+0.1
-1.4
-0.1
-0.7
-0.5
plant
Atlantic
+0.1
-0.8
-0.4
-0.9
-0.3
carbon source
M9+glycerol
-0.1
-0.4
-0.6
-0.9
-0.4
plant
Atlantic
-0.1
-0.6
-0.4
-1.0
-0.3
carbon source
M9+glycerol
-0.1
-0.5
-0.9
+0.2
-0.9
plant
Norland
+0.2
-0.9
+0.3
-0.9
-0.7
carbon source
M9+glycerol
+0.1
-0.3
+0.1
-1.1
-0.7
plant
Atlantic
+0.0
-0.3
-0.4
-1.0
-0.3
plant
Upstate
-0.1
-0.0
-0.0
-0.6
-1.0
plant
Atlantic
-0.0
-0.7
+0.2
-0.0
-1.1
plant
Upstate
+0.1
-0.5
-0.2
-0.4
-0.8
plant
Atlantic
+0.1
-0.5
-0.2
-0.5
-0.6
plant
Upstate
+0.1
-0.6
+0.0
-0.2
-0.8
carbon source
M9+glucose+arginine
+0.1
-0.6
-0.2
-0.4
-0.1
plant
Stem-Atlantic
+0.0
-0.3
+0.1
-0.1
-0.8
carbon source
M9+glucose+arginine
+0.3
-0.2
-0.4
-0.8
-0.0
plant
Norland
-0.0
-0.6
+0.4
-0.6
-0.2
carbon source
M9+glucose
+0.0
-0.0
-0.4
-0.6
+0.3
plant
Norland
+0.6
-1.1
-0.6
+0.1
+0.4
plant
Stem-Norland
+0.2
+0.3
-0.0
-0.4
-0.5
control
PDB
-0.4
+0.4
-0.2
+0.2
+0.3
control
PDB
-0.2
+0.5
-0.1
-0.3
+0.7
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DDA3937_RS14660
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