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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS14540 and DDA3937_RS14545 are separated by 25 nucleotides
DDA3937_RS14545 and DDA3937_RS14550 are separated by 40 nucleotides
DDA3937_RS14550 and DDA3937_RS14555 are separated by 193 nucleotides
DDA3937_RS14555 and DDA3937_RS14560 are separated by 163 nucleotides
DDA3937_RS14540: DDA3937_RS14540 - glutathione S-transferase family protein, at 3,329,950 to 3,330,579
_RS14540
DDA3937_RS14545: DDA3937_RS14545 - type 1 glutamine amidotransferase domain-containing protein, at 3,330,605 to 3,331,282
_RS14545
DDA3937_RS14550: DDA3937_RS14550 - coniferyl aldehyde dehydrogenase, at 3,331,323 to 3,332,741
_RS14550
DDA3937_RS14555: DDA3937_RS14555 - LysR family transcriptional regulator, at 3,332,935 to 3,333,831
_RS14555
DDA3937_RS14560: DDA3937_RS14560 - YfcL family protein, at 3,333,995 to 3,334,273
_RS14560
Group
Condition
DDA3937
_RS14540
DDA3937
_RS14545
DDA3937
_RS14550
DDA3937
_RS14555
DDA3937
_RS14560
plant
Stem-Atlantic
-0.4
-0.3
-0.6
-0.3
N.D.
plant
Stem-Atlantic
-0.5
+0.2
-0.2
-0.2
N.D.
plant
Stem-Atlantic
+0.1
-0.4
-0.1
-0.3
N.D.
control
PDB
-0.1
-0.5
-0.1
-0.1
N.D.
control
PDB
-0.2
-0.5
+0.1
+0.0
N.D.
plant
Stem-Atlantic
+0.2
-0.1
-0.3
-0.2
N.D.
control
PDB
-0.6
+0.2
+0.0
-0.1
N.D.
carbon source
M9+glycerol
-0.1
-0.1
-0.2
+0.2
N.D.
plant
Stem-Atlantic
-0.2
+0.5
-0.4
+0.0
N.D.
plant
Stem-Norland
-0.1
+0.2
+0.0
-0.3
N.D.
plant
Upstate
-0.0
-0.2
-0.2
+0.3
N.D.
control
PDB
-0.5
+0.6
-0.0
-0.1
N.D.
carbon source
M9+glycerol
-0.0
+0.1
+0.3
-0.3
N.D.
control
PDB
-0.1
+0.1
+0.3
-0.2
N.D.
plant
Stem-Norland
+0.2
-0.1
+0.3
-0.2
N.D.
carbon source
M9+glycerol
-0.2
+0.3
+0.0
+0.1
N.D.
carbon source
M9+glycerol
+0.1
+0.4
+0.0
-0.4
N.D.
plant
Atlantic
-0.2
+0.2
+0.1
+0.2
N.D.
plant
Upstate
+0.3
-0.1
-0.2
+0.3
N.D.
carbon source
M9+glucose+arginine
+0.3
-0.2
+0.0
+0.2
N.D.
carbon source
M9+glycerol
-0.2
+0.4
-0.0
+0.2
N.D.
plant
Stem-Norland
+0.4
+0.4
-0.2
-0.2
N.D.
plant
Upstate
-0.1
+0.5
+0.2
-0.1
N.D.
plant
Upstate
+0.1
-0.1
+0.3
+0.2
N.D.
plant
Atlantic
+0.1
-0.2
+0.6
+0.1
N.D.
plant
Norland
+0.2
+0.0
+0.2
+0.3
N.D.
plant
Atlantic
+0.3
+0.2
+0.1
+0.1
N.D.
plant
Norland
-0.1
+0.6
-0.1
+0.4
N.D.
plant
Norland
-0.0
+0.8
-0.3
+0.4
N.D.
plant
Norland
+0.2
+0.7
-0.2
+0.3
N.D.
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