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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS14100 and DDA3937_RS14105 are separated by 12 nucleotides
DDA3937_RS14105 and DDA3937_RS14110 are separated by 472 nucleotides
DDA3937_RS14110 and DDA3937_RS14115 are separated by 529 nucleotides
DDA3937_RS14115 and DDA3937_RS14120 overlap by 1 nucleotides
DDA3937_RS14100: DDA3937_RS14100 - nitrate ABC transporter permease, at 3,224,701 to 3,225,678
_RS14100
DDA3937_RS14105: DDA3937_RS14105 - ABC transporter substrate-binding protein, at 3,225,691 to 3,226,968
_RS14105
DDA3937_RS14110: DDA3937_RS14110 - nitrate- and nitrite sensing domain-containing protein, at 3,227,441 to 3,228,727
_RS14110
DDA3937_RS14115: DDA3937_RS14115 - efflux transporter outer membrane subunit, at 3,229,257 to 3,230,654
_RS14115
DDA3937_RS14120: DDA3937_RS14120 - multidrug efflux RND transporter permease subunit, at 3,230,654 to 3,233,821
_RS14120
Group
Condition
DDA3937
_RS14100
DDA3937
_RS14105
DDA3937
_RS14110
DDA3937
_RS14115
DDA3937
_RS14120
plant
Stem-Atlantic
-1.2
-0.1
-0.2
-0.7
+0.0
carbon source
M9+glucose
-0.7
-0.0
-0.6
+0.4
-0.1
plant
Stem-Atlantic
-0.9
-0.4
+0.5
-0.2
+0.0
plant
Stem-Atlantic
-0.7
-0.5
+0.8
-0.6
+0.0
plant
Atlantic
-1.0
+0.1
+0.4
-0.2
-0.0
control
PDB
-0.6
-0.3
-0.1
-0.0
+0.4
plant
Stem-Norland
-0.6
-0.2
+0.2
+0.2
-0.1
carbon source
M9+glucose+arginine
+0.3
-0.2
-0.1
-0.3
-0.2
carbon source
M9+glycerol
-0.4
-0.4
+0.1
-0.1
+0.2
plant
Stem-Norland
-0.8
-0.2
+0.3
+0.3
-0.1
carbon source
M9+glycerol
-0.4
-0.1
+0.5
-0.3
+0.1
plant
Stem-Norland
-0.4
-0.2
+0.4
-0.1
+0.1
carbon source
M9+glycerol
-0.0
-0.6
+0.3
+0.0
+0.1
plant
Atlantic
-0.8
-0.0
+0.3
+0.6
-0.1
carbon source
M9+glucose+arginine
-0.4
-0.2
+0.3
+0.3
-0.0
control
PDB
-0.3
-0.2
+0.3
+0.0
+0.3
control
PDB
-0.3
+0.0
+0.2
-0.2
+0.4
plant
Norland
+0.5
+0.4
-0.2
-0.4
+0.0
plant
Upstate
+0.5
-0.0
-0.2
+0.1
-0.1
plant
Atlantic
+0.2
+0.1
+0.5
-0.4
-0.0
plant
Stem-Atlantic
+0.5
+0.4
+0.0
-0.3
-0.2
control
PDB
-0.1
-0.3
+0.7
+0.0
+0.1
plant
Stem-Atlantic
+0.2
+0.1
-0.3
+0.3
+0.2
carbon source
M9+glycerol
-0.6
+0.0
+0.9
-0.1
+0.2
plant
Stem-Norland
+0.5
-0.1
+0.3
+0.1
-0.2
control
PDB
+0.2
-0.2
+0.5
+0.2
+0.0
carbon source
M9+glycerol
-0.1
-0.1
+0.6
+0.5
+0.0
plant
Norland
-0.0
-0.0
+0.6
+0.2
+0.2
control
PDB
+0.6
+0.3
+0.4
-0.2
+0.0
plant
Norland
+1.2
-0.0
+0.4
-0.1
+0.1
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DDA3937_RS14110
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