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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS13770 and DDA3937_RS23430 are separated by 436 nucleotides
DDA3937_RS23430 and DDA3937_RS13775 are separated by 100 nucleotides
DDA3937_RS13775 and DDA3937_RS13780 are separated by 329 nucleotides
DDA3937_RS13780 and DDA3937_RS13785 are separated by 104 nucleotides
DDA3937_RS13770: DDA3937_RS13770 - Hcp family type VI secretion system effector, at 3,138,127 to 3,138,645
_RS13770
DDA3937_RS23430: DDA3937_RS23430 - hypothetical protein, at 3,139,082 to 3,139,228
_RS23430
DDA3937_RS13775: DDA3937_RS13775 - helix-turn-helix transcriptional regulator, at 3,139,329 to 3,139,574
_RS13775
DDA3937_RS13780: DDA3937_RS13780 - helix-turn-helix domain-containing protein, at 3,139,904 to 3,140,191
_RS13780
DDA3937_RS13785: DDA3937_RS13785 - helix-turn-helix transcriptional regulator, at 3,140,296 to 3,140,550
_RS13785
Group
Condition
DDA3937
_RS13770
DDA3937
_RS23430
DDA3937
_RS13775
DDA3937
_RS13780
DDA3937
_RS13785
carbon source
M9+glycerol
N.D.
-0.0
-0.6
-0.5
-1.1
control
PDB
N.D.
-0.2
-0.1
-0.5
-1.1
carbon source
M9+glycerol
N.D.
+0.0
-0.2
-0.7
-0.7
carbon source
M9+glycerol
N.D.
-0.4
-0.2
-0.1
-0.9
plant
Atlantic
N.D.
-0.6
-0.1
-0.1
-0.7
control
PDB
N.D.
-0.5
-0.4
+0.6
-1.1
carbon source
M9+glycerol
N.D.
-0.1
-0.4
-0.0
-0.6
plant
Stem-Atlantic
N.D.
+0.0
-0.1
-0.5
-0.6
plant
Atlantic
N.D.
+0.0
+0.2
-0.6
-0.7
carbon source
M9+glycerol
N.D.
-0.3
-0.4
-0.4
+0.2
plant
Stem-Norland
N.D.
+0.5
-0.2
-0.7
-0.3
plant
Norland
N.D.
-0.5
+0.2
-0.7
+0.4
plant
Upstate
N.D.
+0.3
-0.2
-0.6
+0.1
plant
Atlantic
N.D.
+0.3
-0.2
-0.6
+0.2
control
PDB
N.D.
-0.2
-0.5
-0.3
+0.9
carbon source
M9+starch
N.D.
+0.1
+0.0
+0.5
-0.7
plant
Atlantic
N.D.
+0.2
-0.1
-0.6
+0.4
plant
Norland
N.D.
-0.2
+1.0
-1.2
+0.5
plant
Norland
N.D.
-0.6
+0.3
+0.1
+0.3
plant
Stem-Norland
N.D.
+0.0
+0.2
-0.6
+0.7
control
LB
N.D.
-0.0
-0.4
+0.5
+0.4
control
PDB
N.D.
+0.2
-0.4
+0.2
+0.6
control
PDB
N.D.
-1.1
-0.4
+0.5
+1.7
plant
Upstate
N.D.
+0.3
-0.2
+0.2
+1.1
plant
Stem-Norland
N.D.
+0.1
+0.5
-0.4
+1.3
plant
Stem-Atlantic
N.D.
+0.4
+0.6
+0.5
+0.2
plant
Norland
N.D.
+0.4
+0.2
-0.1
+1.3
plant
Stem-Atlantic
N.D.
+1.0
-0.2
+1.1
-0.1
plant
Stem-Norland
N.D.
-0.1
-0.0
+0.3
+1.8
plant
Stem-Atlantic
N.D.
+0.2
+1.2
+1.9
-1.0
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