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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS22335 and DDA3937_RS13755 are separated by 406 nucleotides
DDA3937_RS13755 and DDA3937_RS13760 are separated by 11 nucleotides
DDA3937_RS13760 and DDA3937_RS13765 are separated by 13 nucleotides
DDA3937_RS13765 and DDA3937_RS13770 are separated by 112 nucleotides
DDA3937_RS22335: DDA3937_RS22335 - SMI1/KNR4 family protein, at 3,130,907 to 3,131,407
_RS22335
DDA3937_RS13755: DDA3937_RS13755 - PAAR domain-containing protein, at 3,131,814 to 3,135,728
_RS13755
DDA3937_RS13760: DDA3937_RS13760 - DUF1795 domain-containing protein, at 3,135,740 to 3,136,147
_RS13760
DDA3937_RS13765: DDA3937_RS13765 - type VI secretion system tip protein VgrG, at 3,136,161 to 3,138,014
_RS13765
DDA3937_RS13770: DDA3937_RS13770 - Hcp family type VI secretion system effector, at 3,138,127 to 3,138,645
_RS13770
Group
Condition
DDA3937
_RS22335
DDA3937
_RS13755
DDA3937
_RS13760
DDA3937
_RS13765
DDA3937
_RS13770
carbon source
M9+glucose+arginine
N.D.
-0.1
-0.6
-0.1
N.D.
control
PDB
N.D.
+0.3
-1.4
+0.3
N.D.
stress
7.5mM_PTB
N.D.
-0.2
-0.3
-0.3
N.D.
plant
Stem-Atlantic
N.D.
-0.1
-0.8
+0.2
N.D.
plant
Stem-Norland
N.D.
+0.1
-0.5
-0.3
N.D.
stress
7.5mM_PTB
N.D.
-0.0
-0.5
-0.1
N.D.
plant
Norland
N.D.
+0.2
-0.5
-0.3
N.D.
plant
Atlantic
N.D.
-0.1
-0.6
+0.4
N.D.
carbon source
M9+glucose+arginine
N.D.
-0.1
-0.5
+0.3
N.D.
carbon source
M9+glucose
N.D.
-0.0
-0.5
+0.2
N.D.
carbon source
M9+starch
N.D.
+0.1
-0.4
+0.2
N.D.
carbon source
M9+starch
N.D.
+0.1
-0.4
+0.2
N.D.
carbon source
M9+glycerol
N.D.
-0.2
+0.3
-0.3
N.D.
plant
Stem-Atlantic
N.D.
+0.1
-0.4
+0.2
N.D.
plant
Norland
N.D.
+0.0
+0.2
-0.3
N.D.
plant
Stem-Atlantic
N.D.
-0.0
-0.3
+0.4
N.D.
plant
Norland
N.D.
+0.2
-0.3
+0.2
N.D.
plant
Stem-Norland
N.D.
+0.1
-0.2
+0.3
N.D.
plant
Stem-Atlantic
N.D.
-0.1
+0.8
-0.2
N.D.
control
LB
N.D.
+0.1
+0.3
+0.2
N.D.
control
PDB
N.D.
+0.0
+0.3
+0.3
N.D.
plant
Stem-Atlantic
N.D.
-0.0
+0.3
+0.5
N.D.
plant
Stem-Norland
N.D.
+0.0
+0.5
+0.4
N.D.
plant
Upstate
N.D.
+0.5
+0.5
-0.1
N.D.
plant
Stem-Norland
N.D.
+0.1
+0.4
+0.4
N.D.
control
PDB
N.D.
+0.2
+0.4
+0.3
N.D.
plant
Norland
N.D.
+0.2
+0.6
+0.5
N.D.
plant
Atlantic
N.D.
+0.3
+0.7
+0.4
N.D.
control
PDB
N.D.
+0.4
+0.4
+0.8
N.D.
plant
Upstate
N.D.
-0.0
+2.4
-0.0
N.D.
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DDA3937_RS13760
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