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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS13735 and DDA3937_RS13740 are separated by 154 nucleotides
DDA3937_RS13740 and DDA3937_RS13750 are separated by 1014 nucleotides
DDA3937_RS13750 and DDA3937_RS22335 are separated by 545 nucleotides
DDA3937_RS22335 and DDA3937_RS13755 are separated by 406 nucleotides
DDA3937_RS13735: DDA3937_RS13735 - integrase arm-type DNA-binding domain-containing protein, at 3,126,671 to 3,127,954
_RS13735
DDA3937_RS13740: DDA3937_RS13740 - DUF736 domain-containing protein, at 3,128,109 to 3,128,420
_RS13740
DDA3937_RS13750: DDA3937_RS13750 - hypothetical protein, at 3,129,435 to 3,130,361
_RS13750
DDA3937_RS22335: DDA3937_RS22335 - SMI1/KNR4 family protein, at 3,130,907 to 3,131,407
_RS22335
DDA3937_RS13755: DDA3937_RS13755 - PAAR domain-containing protein, at 3,131,814 to 3,135,728
_RS13755
Group
Condition
DDA3937
_RS13735
DDA3937
_RS13740
DDA3937
_RS13750
DDA3937
_RS22335
DDA3937
_RS13755
plant
Atlantic
-0.2
-1.1
-0.3
N.D.
-0.1
carbon source
M9+glycerol
-0.2
-0.6
+0.1
N.D.
-0.2
stress
7.5mM_PTB
+0.0
-0.7
-0.2
N.D.
-0.1
control
PDB
-0.0
+0.0
-0.9
N.D.
+0.0
stress
1.88mM_PTB
+0.0
-0.5
-0.4
N.D.
+0.0
carbon source
M9+glucose+arginine
-0.1
-0.0
-0.5
N.D.
-0.1
carbon source
M9+glycerol
-0.5
-0.3
-0.0
N.D.
+0.1
stress
7.5mM_PTB
+0.0
-0.6
-0.0
N.D.
-0.2
plant
Stem-Atlantic
+0.3
-0.1
-0.7
N.D.
-0.0
plant
Stem-Atlantic
-0.1
+0.2
-0.3
N.D.
-0.1
plant
Atlantic
+0.0
-0.7
+0.3
N.D.
+0.0
control
LB
+0.2
-0.4
-0.1
N.D.
+0.1
plant
Atlantic
-0.3
+0.4
-0.3
N.D.
-0.0
carbon source
M9+starch
+0.1
-0.3
-0.2
N.D.
+0.1
plant
Stem-Norland
+0.1
+0.0
-0.5
N.D.
+0.1
control
PDB
-0.3
+0.1
-0.1
N.D.
+0.3
carbon source
M9+glycerol
+0.4
+0.1
-0.3
N.D.
-0.1
plant
Stem-Norland
+0.0
-0.2
+0.5
N.D.
-0.0
control
PDB
+0.4
+0.7
-0.7
N.D.
+0.1
carbon source
M9+glucose+arginine
-0.0
+0.4
+0.2
N.D.
-0.1
plant
Upstate
-0.2
+0.4
+0.4
N.D.
+0.0
plant
Norland
-0.1
+0.3
+0.4
N.D.
-0.1
plant
Atlantic
-0.2
+0.6
+0.3
N.D.
+0.0
carbon source
M9+glucose
+0.1
+0.4
+0.4
N.D.
+0.0
plant
Stem-Norland
+0.3
+0.2
+0.2
N.D.
+0.1
control
PDB
-0.2
+0.7
-0.0
N.D.
+0.4
plant
Stem-Norland
+0.2
+0.6
+0.3
N.D.
+0.0
plant
Stem-Norland
-0.1
+1.1
+0.1
N.D.
+0.1
plant
Norland
+0.2
+0.5
+0.7
N.D.
+0.0
control
PDB
-0.1
+1.5
+0.0
N.D.
+0.3
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