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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS13725 and DDA3937_RS13730 are separated by 384 nucleotides
DDA3937_RS13730 and DDA3937_RS13735 are separated by 161 nucleotides
DDA3937_RS13735 and DDA3937_RS13740 are separated by 154 nucleotides
DDA3937_RS13740 and DDA3937_RS13750 are separated by 1014 nucleotides
DDA3937_RS13725: DDA3937_RS13725 - LysR family transcriptional regulator, at 3,125,783 to 3,126,049
_RS13725
DDA3937_RS13730: DDA3937_RS13730 - tRNA-Asn, at 3,126,434 to 3,126,509
_RS13730
DDA3937_RS13735: DDA3937_RS13735 - integrase arm-type DNA-binding domain-containing protein, at 3,126,671 to 3,127,954
_RS13735
DDA3937_RS13740: DDA3937_RS13740 - DUF736 domain-containing protein, at 3,128,109 to 3,128,420
_RS13740
DDA3937_RS13750: DDA3937_RS13750 - hypothetical protein, at 3,129,435 to 3,130,361
_RS13750
Group
Condition
DDA3937
_RS13725
DDA3937
_RS13730
DDA3937
_RS13735
DDA3937
_RS13740
DDA3937
_RS13750
plant
Atlantic
N.D.
N.D.
-0.2
-1.1
-0.3
control
PDB
N.D.
N.D.
-0.0
+0.0
-0.9
stress
1.88mM_PTB
N.D.
N.D.
+0.0
-0.5
-0.4
stress
7.5mM_PTB
N.D.
N.D.
+0.0
-0.7
-0.2
carbon source
M9+glycerol
N.D.
N.D.
-0.5
-0.3
-0.0
carbon source
M9+glycerol
N.D.
N.D.
-0.2
-0.6
+0.1
plant
Upstate
N.D.
N.D.
-0.2
-0.1
-0.3
carbon source
M9+glucose+arginine
N.D.
N.D.
-0.1
-0.0
-0.5
plant
Stem-Atlantic
N.D.
N.D.
+0.3
-0.1
-0.7
stress
3.75mM_PTB
N.D.
N.D.
+0.2
-0.4
-0.1
carbon source
M9+starch
N.D.
N.D.
+0.1
-0.3
-0.2
plant
Atlantic
N.D.
N.D.
+0.0
-0.7
+0.3
control
LB
N.D.
N.D.
+0.2
-0.4
-0.1
plant
Atlantic
N.D.
N.D.
-0.3
+0.4
-0.3
plant
Stem-Atlantic
N.D.
N.D.
-0.1
+0.2
-0.3
carbon source
M9+glycerol
N.D.
N.D.
+0.4
+0.1
-0.3
stress
1.88mM_PTB
N.D.
N.D.
+0.2
-0.2
+0.2
plant
Stem-Norland
N.D.
N.D.
+0.0
-0.2
+0.5
control
PDB
N.D.
N.D.
+0.4
+0.7
-0.7
control
PDB
N.D.
N.D.
-0.2
+0.7
-0.0
plant
Upstate
N.D.
N.D.
-0.2
+0.4
+0.4
plant
Norland
N.D.
N.D.
-0.1
+0.3
+0.4
carbon source
M9+polygalacturonate
N.D.
N.D.
+0.2
+0.4
+0.1
plant
Atlantic
N.D.
N.D.
-0.2
+0.6
+0.3
plant
Stem-Norland
N.D.
N.D.
+0.3
+0.2
+0.2
carbon source
M9+glucose
N.D.
N.D.
+0.1
+0.4
+0.4
plant
Stem-Norland
N.D.
N.D.
+0.2
+0.6
+0.3
plant
Stem-Norland
N.D.
N.D.
-0.1
+1.1
+0.1
plant
Norland
N.D.
N.D.
+0.2
+0.5
+0.7
control
PDB
N.D.
N.D.
-0.1
+1.5
+0.0
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