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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS13585 and DDA3937_RS13590 are separated by 41 nucleotides
DDA3937_RS13590 and DDA3937_RS13595 are separated by 423 nucleotides
DDA3937_RS13595 and DDA3937_RS13600 are separated by 239 nucleotides
DDA3937_RS13600 and DDA3937_RS13605 are separated by 406 nucleotides
DDA3937_RS13585: DDA3937_RS13585 - VOC family protein, at 3,094,322 to 3,094,741
_RS13585
DDA3937_RS13590: DDA3937_RS13590 - hypothetical protein, at 3,094,783 to 3,095,262
_RS13590
DDA3937_RS13595: DDA3937_RS13595 - EmmdR/YeeO family multidrug/toxin efflux MATE transporter, at 3,095,686 to 3,097,122
_RS13595
DDA3937_RS13600: DDA3937_RS13600 - cytochrome b562, at 3,097,362 to 3,097,739
_RS13600
DDA3937_RS13605: DDA3937_RS13605 - cellulase family glycosylhydrolase, at 3,098,146 to 3,099,426
_RS13605
Group
Condition
DDA3937
_RS13585
DDA3937
_RS13590
DDA3937
_RS13595
DDA3937
_RS13600
DDA3937
_RS13605
plant
Upstate
-0.6
+0.2
-0.0
-0.5
-0.1
plant
Stem-Atlantic
-0.0
-0.2
-0.1
-0.5
-0.2
carbon source
M9+glycerol
-0.0
+0.2
+0.0
-0.9
-0.2
carbon source
M9+glycerol
+0.0
-0.2
-0.0
-0.8
+0.0
control
PDB
-0.1
+0.3
-0.1
-0.7
-0.2
carbon source
M9+polygalacturonate
-0.1
+0.1
-0.5
-0.2
-0.0
carbon source
M9+glucose+arginine
+0.1
-0.5
+0.1
-0.1
-0.3
plant
Stem-Norland
+0.1
-0.1
+0.1
-0.8
+0.1
plant
Stem-Atlantic
-0.9
+0.5
-0.0
-0.2
+0.2
control
PDB
+0.4
-0.2
-0.2
-0.5
-0.1
plant
Atlantic
-0.0
-0.3
+0.2
-0.3
+0.1
carbon source
M9+glycerol
-0.3
+0.2
-0.2
-0.2
+0.2
carbon source
M9+glucose+arginine
+0.3
-0.2
+0.1
-0.3
-0.2
plant
Atlantic
-0.3
+0.3
-0.0
-0.6
+0.3
carbon source
M9+polygalacturonate
+0.3
+0.0
-0.7
+0.2
-0.1
control
PDB
+0.4
+0.6
-0.1
-0.6
-0.5
plant
Norland
-0.2
-0.4
+0.2
+0.3
-0.1
plant
Stem-Norland
-0.2
-0.2
-0.1
+0.4
+0.1
plant
Norland
-0.1
+0.2
-0.1
-0.1
+0.4
stress
1.88mM_PTB
+0.5
-0.2
-0.1
+0.1
-0.1
plant
Stem-Atlantic
-0.1
-0.2
+0.3
+0.2
+0.3
control
PDB
+0.5
+0.2
+0.0
+0.2
-0.4
control
PDB
+0.3
+0.5
+0.2
-0.0
-0.1
plant
Norland
+0.6
-0.3
-0.0
+0.3
+0.2
plant
Stem-Norland
+0.3
+0.4
+0.2
-0.1
-0.1
plant
Atlantic
-0.1
+0.2
+0.2
+0.1
+0.5
plant
Atlantic
+0.4
+0.4
-0.0
+0.1
+0.2
plant
Upstate
-0.5
-0.1
+0.1
+1.5
+0.1
plant
Norland
+0.1
+0.4
+0.3
+0.3
+0.3
plant
Stem-Norland
+0.8
+0.4
+0.1
+0.1
-0.0
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