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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS13550 and DDA3937_RS13555 overlap by 4 nucleotides
DDA3937_RS13555 and DDA3937_RS13560 are separated by 133 nucleotides
DDA3937_RS13560 and DDA3937_RS13565 are separated by 2 nucleotides
DDA3937_RS13565 and DDA3937_RS13570 are separated by 622 nucleotides
DDA3937_RS13550: DDA3937_RS13550 - flagellar motor protein MotB, at 3,087,090 to 3,088,220
_RS13550
DDA3937_RS13555: DDA3937_RS13555 - flagellar motor stator protein MotA, at 3,088,217 to 3,089,104
_RS13555
DDA3937_RS13560: DDA3937_RS13560 - flagellar transcriptional regulator FlhC, at 3,089,238 to 3,089,816
_RS13560
DDA3937_RS13565: DDA3937_RS13565 - flagellar transcriptional regulator FlhD, at 3,089,819 to 3,090,169
_RS13565
DDA3937_RS13570: DDA3937_RS13570 - iron-containing alcohol dehydrogenase, at 3,090,792 to 3,091,946
_RS13570
Group
Condition
DDA3937
_RS13550
DDA3937
_RS13555
DDA3937
_RS13560
DDA3937
_RS13565
DDA3937
_RS13570
plant
Stem-Atlantic
-3.0
-3.9
-3.1
-4.9
+0.2
plant
Stem-Atlantic
-3.2
-3.1
-3.2
-4.1
+0.2
plant
Stem-Norland
-3.3
-2.5
-2.3
-3.6
-0.0
plant
Stem-Atlantic
-2.4
-2.7
-3.2
-3.6
+0.2
plant
Stem-Norland
-2.9
-2.4
-3.1
-3.3
+0.3
plant
Stem-Atlantic
-2.5
-2.7
-2.5
-3.4
+0.3
plant
Stem-Norland
-2.4
-2.7
-2.4
-2.7
+0.6
plant
Stem-Norland
-2.3
-2.5
-2.2
-2.6
+0.3
plant
Stem-Norland
-2.1
-2.3
-1.9
-2.0
+0.1
plant
Stem-Atlantic
-2.3
-2.4
-1.7
-1.8
+0.1
carbon source
M9+polygalacturonate
-2.1
-2.3
-1.1
-0.9
+0.2
carbon source
M9+starch
-2.4
-3.0
-0.0
-0.3
+0.1
carbon source
M9+polygalacturonate
-2.0
-2.0
-0.6
-0.5
+0.2
carbon source
M9+starch
-2.0
-2.4
-0.1
-0.2
-0.2
control
LB
-1.5
-1.7
-0.8
-0.9
+0.0
control
LB
-1.5
-1.4
-0.9
-1.0
+0.2
plant
Atlantic
+1.3
+1.4
+1.4
+1.2
-0.0
plant
Norland
+0.9
+1.2
+1.9
+1.4
+0.1
plant
Upstate
+1.2
+1.0
+1.8
+1.9
-0.1
plant
Atlantic
+1.4
+1.5
+1.6
+1.6
+0.2
carbon source
M9+glucose
+1.1
+1.5
+1.8
+1.8
+0.1
plant
Upstate
+2.0
+2.3
+1.1
+1.1
-0.1
carbon source
M9+glucose+arginine
+1.4
+1.8
+1.4
+1.6
+0.2
plant
Atlantic
+0.9
+1.7
+3.6
+3.6
+0.2
carbon source
M9+glycerol
+4.4
+4.9
+3.2
+3.3
+0.0
carbon source
M9+glycerol
+4.5
+4.7
+4.3
+4.5
-0.0
carbon source
M9+glycerol
+4.6
+4.9
+4.8
+4.7
+0.1
carbon source
M9+glycerol
+5.0
+5.4
+4.6
+4.8
+0.0
carbon source
M9+glycerol
+5.2
+5.9
+4.7
+4.7
-0.3
carbon source
M9+glycerol
+6.3
+6.7
+4.9
+5.4
-0.3
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